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choose between local/appose mode for each case
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src/fish_feats/SegmentObj.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -378,7 +378,7 @@ def share_as_ndarray(img: np.ndarray) -> appose.NDArray:
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shared.ndarray()[:] = img
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return shared
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def stardist2D_local(img, prob, over):
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def stardist2D_local(img, prob, over, progress_bar=None ):
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""" run stardist model, segment nuclei in 2D """
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try:
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from csbdeep.utils import Path, normalize

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