preproc.toml

# What to do.
[tasks]
sync = false
debug = false
preprocess = true   # I can't think of a scenario where this would be false.
interpolate = true
interpolate_isig = true # Should default to false 
differentiate = true # Add first finite differences 

# Directories to read from / write to.
[locations]
source = "remote_data"          # Raw data, exported from medtronic's website.
preprocessed = "processed"      # Where to write processed data, without interpolation
interpolated = "interpolated"        # Idem, but interpolated.
history = ""                    # Name of the history file (.toml)

# How to do the processing
[specs]
interpolation = "full"          # Either "full" or "daily"
verbose = false
ignore_lock = false
write_lock = true
diff_intervals = [15, 30, 60, 120] # to be deprecated.

[interpolation.specs]
methods = { linear = 0.65, akima = 0.25, polynomial = 0.10 }
direction = "both"
limit = 120
limit_area = "inside"
order = 2

[differentiation.specs]
delta = 1
window_size = 5

# Hardware optimisation
[hardware]
n_threads = 12

# File-specific specs (Carelink, FreeStyle, etc.)
[file.specs]
type = "medtronic"
date = "Date"
time = "Time"
header_row_num = 7
dummy_index = "Index"
glycaemia_column = "Sensor Glucose (mg/dL)"
isig_column = "ISIG Value"