Most of the settings in gobpie.json are things that you would want to set per computer, not per folder. Given this, I think it would make sense to use VS Code's intended solution for managing extension configuration, which as far as I can tell is declaring settings in contributes.configuration and reading them from Gobpie using the LSP worspace/configuration request.
If this is implemented we could get rid of gobpie.json entirely and since VS Code supports overriding settings per-folder this would result in no loss of flexibility and an improvement in usability.