ESCOMP tag: cam6_4_039

Merge pull request ESCOMP#1161 from brian-eaton/ext

cam6_4_039: update externals to cesm3_0_alpha03d

ESCOMP commit: f0e489e

Author: brian-eaton

cime_config/SystemTests/plb.py

@@ -11,7 +11,7 @@
 from CIME.SystemTests.system_tests_compare_two import SystemTestsCompareTwo
 from CIME.XML.standard_module_setup import *
 from CIME.SystemTests.test_utils.user_nl_utils import append_to_user_nl_files
-from CIME.utils import append_testlog
+from CIME.status import append_testlog
 
 logger = logging.getLogger(__name__)
 

cime_config/SystemTests/sct.py

@@ -14,7 +14,7 @@
 from CIME.XML.standard_module_setup import *
 from CIME.SystemTests.test_utils.user_nl_utils import append_to_user_nl_files
 from CIME.test_status import *
-from CIME.utils import append_testlog
+from CIME.status import append_testlog
 
 
 logger = logging.getLogger(__name__)

cime_config/SystemTests/sub.py

@@ -11,7 +11,7 @@
 from CIME.SystemTests.system_tests_compare_two import SystemTestsCompareTwo
 from CIME.XML.standard_module_setup import *
 from CIME.SystemTests.test_utils.user_nl_utils import append_to_user_nl_files
-from CIME.utils import append_testlog
+from CIME.status import append_testlog
 
 
 logger = logging.getLogger(__name__)

cime_config/SystemTests/tmc.py

@@ -5,7 +5,7 @@
 from CIME.XML.standard_module_setup import *
 from CIME.SystemTests.system_tests_common import SystemTestsCommon
 from CIME.test_status import *
-from CIME.utils import append_testlog
+from CIME.status import append_testlog
 from CIME.baselines.performance import get_latest_cpl_logs
 import glob, gzip
 

doc/ChangeLog

@@ -1,3 +1,247 @@
+===============================================================
+
+Tag name: cam6_4_039
+Originator(s): eaton
+Date: 10 October 2024
+One-line Summary: update externals to cesm3_0_alpha03d
+Github PR URL: https://github.com/ESCOMP/CAM/pull/1161
+
+Purpose of changes (include the issue number and title text for each relevant GitHub issue):
+
+The externals have been updated as follows:
+  ccs_config_cesm1.0.0 -> ccs_config_cesm1.0.7
+  cime6.1.0            -> cime6.1.29
+  cmeps1.0.2           -> cmeps1.0.16
+  cdeps1.0.48          -> cdeps1.0.53
+  pio2_6_2             -> pio2_6_3
+  ctsm5.2.027          -> ctsm5.3.002
+  fi_240516            -> fi_240828
+
+Issue #1134 - PLB,SCT,SUB, and TMC test need to be updated for cime6.1.12
+. The fix in this issue needs to be applied to this commit since cime6.1.0
+  has been updated to cime6.1.29
+
+Found during testing: need to modify test_driver.sh to not add the
+'--queue main' argument to the create_test command for derecho.  This is
+due to a change in how the derecho queues are set up.
+
+Describe any changes made to build system: none
+
+Describe any changes made to the namelist: none
+
+List any changes to the defaults for the boundary datasets: none
+
+Describe any substantial timing or memory changes: none
+
+Code reviewed by: cacraig
+
+List all files eliminated: none
+
+List all files added and what they do: none
+
+List all existing files that have been modified, and describe the changes:
+
+.gitmodules
+. update modules as listed above
+
+cime_config/SystemTests/plb.py
+cime_config/SystemTests/sub.py
+cime_config/SystemTests/sct.py
+cime_config/SystemTests/tmc.py
+. 'from CIME.utils import append_testlog' changed to 
+  'from CIME.status import append_testlog'
+
+test/system/test_driver.sh
+. remove '--queue ${CAM_BATCHQ}' from commandline args for the create_test
+  command on derecho.
+
+If there were any failures reported from running test_driver.sh on any test
+platform, and checkin with these failures has been OK'd by the gatekeeper,
+then copy the lines from the td.*.status files for the failed tests to the
+appropriate machine below.  All failed tests must be justified.
+
+derecho/intel/aux_cam:
+
+ERP_Ln9.f09_f09_mg17.FCSD_HCO.derecho_intel.cam-outfrq9s (Overall: FAIL)
+- pre-existing failure due to HEMCO not having reproducible results issues #1018 and #856
+
+SMS_D_Ln9_P1280x1.ne0CONUSne30x8_ne0CONUSne30x8_mt12.FCHIST.derecho_intel.cam-outfrq9s (Overall: PEND)
+- pre-existing failure -- needs fix in CLM external
+
+ERP_Ln9_P24x3.f45_f45_mg37.QPWmaC6.derecho_intel.cam-outfrq9s_mee_fluxes (Overall: PEND)
+ERS_Ld3.f10_f10_mg37.F1850.derecho_intel.cam-outfrq1d_14dec_ghg_cam7 (Overall: PEND)
+ERS_Ln9_P36x1.mpasa480_mpasa480.F2000climo.derecho_intel.cam-outfrq9s_mpasa480 (Overall: PEND)
+SMS_Lm13.f10_f10_mg37.F2000climo.derecho_intel.cam-outfrq1m (Overall: PEND)
+. new failures to run due to create_test updates - jobs are running into resource
+  limits due to being switched to run in the 'develop' queue rather than 'main'
+
+SMS_D_Ln9.f19_f19_mg17.FXHIST.derecho_intel.cam-outfrq9s_amie (Overall: PEND)
+. new failure due to ctsm update.  Appears to be the same CLM
+  build-namelist failure that happens in the CONUS test.  See CTSM issue #2544
+
+ERC_D_Ln9.ne16_ne16_mg17.FADIAB.derecho_intel.cam-terminator (Overall: NLFAIL)
+ERC_D_Ln9.T42_T42_mg17.FDABIP04.derecho_intel.cam-outfrq3s_usecase (Overall: NLFAIL)
+ERC_D_Ln9.T42_T42_mg17.FHS94.derecho_intel.cam-outfrq3s_usecase (Overall: NLFAIL)
+ERS_Ln9.ne0TESTONLYne5x4_ne0TESTONLYne5x4_mg37.FADIAB.derecho_intel.cam-outfrq3s_refined (Overall: NLFAIL)
+SMS_D_Ld5.f19_f19_mg17.PC4.derecho_intel.cam-cam4_port5d (Overall: NLFAIL)
+SMS_Ld5.f09_f09_mg17.PC6.derecho_intel.cam-cam6_port_f09 (Overall: NLFAIL)
+. diffs in coupler attributes
+
+ERC_D_Ln9.f19_f19_mg17.QPC6.derecho_intel.cam-outfrq3s_cosp (Overall: DIFF)
+ERC_D_Ln9.f19_f19_mg17.QPMOZ.derecho_intel.cam-outfrq3s (Overall: DIFF)
+ERC_D_Ln9.f19_f19_mg17.QPX2000.derecho_intel.cam-outfrq3s (Overall: DIFF)
+ERC_D_Ln9.ne16_ne16_mg17.QPC5HIST.derecho_intel.cam-outfrq3s_usecase (Overall: DIFF)
+ERC_D_Ln9_P144x1.ne16pg3_ne16pg3_mg17.QPC6HIST.derecho_intel.cam-outfrq3s_ttrac_usecase (Overall: DIFF)
+ERI_D_Ln18.f45_f45_mg37.QPC41850.derecho_intel.cam-co2rmp_usecase (Overall: DIFF)
+ERP_D_Ln9.f19_f19_mg17.QPC6.derecho_intel.cam-outfrq9s (Overall: DIFF)
+ERP_D_Ln9_P64x2.f09_f09_mg17.QSC6.derecho_intel.cam-outfrq9s (Overall: DIFF)
+SCT_D_Ln7.ne3_ne3_mg37.QPC5.derecho_intel.cam-scm_prep (Overall: DIFF)
+SCT_D_Ln7.T42_T42_mg17.QPC5.derecho_intel.cam-scm_prep (Overall: DIFF)
+SMS_D_Ld2.f19_f19_mg17.QPC5HIST.derecho_intel.cam-volc_usecase (Overall: DIFF)
+SMS_D_Ln9.f19_f19_mg17.QPC2000climo.derecho_intel.cam-outfrq3s_usecase (Overall: DIFF)
+SMS_D_Ln9.f19_f19_mg17.QPC5M7.derecho_intel.cam-outfrq9s (Overall: DIFF)
+SMS_D_Ln9.ne16_ne16_mg17.QPX2000.derecho_intel.cam-outfrq9s (Overall: DIFF)
+. diffs in coupler attributes
+. diffs in coupler history files
+
+ERP_D_Ln9.ne30pg3_ne30pg3_mg17.FLTHIST.derecho_intel.cam-outfrq9s (Overall: DIFF)
+ERP_D_Ln9.ne30pg3_ne30pg3_mg17.FLTHIST.derecho_intel.cam-outfrq9s_rrtmgp (Overall: DIFF)
+ERP_Ld3.f09_f09_mg17.FWHIST.derecho_intel.cam-reduced_hist1d (Overall: DIFF)
+ERP_Ld3.ne30pg3_ne30pg3_mg17.FCts4MTHIST.derecho_intel.cam-outfrq1d_aoa (Overall: DIFF)
+ERP_Lh12.f19_f19_mg17.FW4madSD.derecho_intel.cam-outfrq3h (Overall: DIFF)
+ERP_Ln9.C96_C96_mg17.F2000climo.derecho_intel.cam-outfrq9s_mg3 (Overall: DIFF)
+ERP_Ln9.f09_f09_mg17.F1850.derecho_intel.cam-outfrq9s (Overall: DIFF)
+ERP_Ln9.f09_f09_mg17.F2000climo.derecho_intel.cam-outfrq9s (Overall: DIFF)
+ERP_Ln9.f09_f09_mg17.F2010climo.derecho_intel.cam-outfrq9s (Overall: DIFF)
+ERP_Ln9.f09_f09_mg17.FHIST_BDRD.derecho_intel.cam-outfrq9s (Overall: DIFF)
+ERP_Ln9.f19_f19_mg17.FWsc1850.derecho_intel.cam-outfrq9s (Overall: DIFF)
+ERP_Ln9.ne30pg3_ne30pg3_mg17.FCnudged.derecho_intel.cam-outfrq9s (Overall: DIFF)
+ERP_Ln9.ne30pg3_ne30pg3_mg17.FW2000climo.derecho_intel.cam-outfrq9s (Overall: DIFF)
+ERS_Ln9.f09_f09_mg17.FX2000.derecho_intel.cam-outfrq9s (Overall: DIFF)
+ERS_Ln9.f19_f19_mg17.FSPCAMS.derecho_intel.cam-outfrq9s (Overall: DIFF)
+ERS_Ln9.f19_f19_mg17.FXSD.derecho_intel.cam-outfrq9s (Overall: DIFF)
+ERS_Ln9_P288x1.mpasa120_mpasa120.F2000climo.derecho_intel.cam-outfrq9s_mpasa120 (Overall: DIFF)
+SMS_D_Ln9.f09_f09_mg17.FCts2nudged.derecho_intel.cam-outfrq9s_leapday (Overall: DIFF)
+SMS_D_Ln9.f09_f09_mg17.FCvbsxHIST.derecho_intel.cam-outfrq9s (Overall: DIFF)
+SMS_D_Ln9.f09_f09_mg17.FSD.derecho_intel.cam-outfrq9s (Overall: DIFF)
+SMS_D_Ln9.f19_f19_mg17.FWma2000climo.derecho_intel.cam-outfrq9s (Overall: DIFF)
+SMS_D_Ln9.f19_f19_mg17.FWma2000climo.derecho_intel.cam-outfrq9s_waccm_ma_mam4 (Overall: DIFF)
+SMS_D_Ln9.ne16pg3_ne16pg3_mg17.FX2000.derecho_intel.cam-outfrq9s (Overall: DIFF)
+SMS_D_Ln9.ne30pg3_ne30pg3_mg17.FMTHIST.derecho_intel.cam-outfrq9s (Overall: DIFF)
+SMS_D_Ln9_P1280x1.ne0ARCTICne30x4_ne0ARCTICne30x4_mt12.FHIST.derecho_intel.cam-outfrq9s (Overall: DIFF)
+SMS_D_Ln9_P1280x1.ne30pg3_ne30pg3_mg17.FCLTHIST.derecho_intel.cam-outfrq9s_Leung_dust (Overall: DIFF)
+SMS_D_Ln9.T42_T42.FSCAMARM97.derecho_intel.cam-outfrq9s (Overall: DIFF)
+SMS_Ld1.f09_f09_mg17.FCHIST_GC.derecho_intel.cam-outfrq1d (Overall: DIFF)
+SMS_Ld1.f09_f09_mg17.FW2000climo.derecho_intel.cam-outfrq1d (Overall: DIFF)
+SMS_Ld1.ne30pg3_ne30pg3_mg17.FC2010climo.derecho_intel.cam-outfrq1d (Overall: DIFF)
+SMS_Lh12.f09_f09_mg17.FCSD_HCO.derecho_intel.cam-outfrq3h (Overall: DIFF) details:
+SMS_Ln9.f09_f09_mg17.F2010climo.derecho_intel.cam-nudging (Overall: DIFF) details:
+SMS_Ln9.f09_f09_mg17.FW1850.derecho_intel.cam-reduced_hist3s (Overall: DIFF) details:
+SMS_Ln9.f19_f19.F2000climo.derecho_intel.cam-silhs (Overall: DIFF) details:
+SMS_Ln9.f19_f19_mg17.FHIST.derecho_intel.cam-outfrq9s_nochem (Overall: DIFF) details:
+SMS_Ln9.ne30pg3_ne30pg3_mg17.FW2000climo.derecho_intel.cam-outfrq9s_rrtmgp (Overall: DIFF) details:
+. diffs in coupler attributes and clm namelist
+. diffs in cam, cpl, and clm history files
+
+derecho/nvhpc/aux_cam:
+
+ERS_Ln9_G4-a100-openacc.ne30pg3_ne30pg3_mg17.F2000dev.derecho_nvhpc.cam-outfrq9s_mg3_default (Overall: DIFF)
+. diffs in coupler attributes and clm namelist
+. diffs in cam, clm, and cpl history files
+
+izumi/nag/aux_cam:
+
+DAE.f45_f45_mg37.FHS94.izumi_nag.cam-dae (Overall: FAIL) details:
+- pre-existing failure - issue #670
+
+ERC_D_Ln9.mpasa480z32_mpasa480.FHS94.izumi_nag.cam-outfrq3s_usecase (Overall: NLFAIL)
+ERI_D_Ln18.ne5_ne5_mg37.FADIAB.izumi_nag.cam-outfrq3s_bwic (Overall: NLFAIL)
+ERI_D_Ln18.ne5pg3_ne5pg3_mg37.FADIAB.izumi_nag.cam-outfrq3s_bwic (Overall: NLFAIL)
+ERS_Ln27.ne5pg3_ne5pg3_mg37.FKESSLER.izumi_nag.cam-outfrq9s (Overall: NLFAIL)
+ERS_Ln9.ne5_ne5_mg37.FADIAB.izumi_nag.cam-outfrq9s (Overall: NLFAIL)
+PEM_D_Ln9.ne5_ne5_mg37.FADIAB.izumi_nag.cam-outfrq3s (Overall: NLFAIL)
+SMS_D_Ld2.f45_f45_mg37.PC5.izumi_nag.cam-outfrq24h_port (Overall: NLFAIL)
+SMS_D_Ln9_P1x1.ne5_ne5_mg37.FADIAB.izumi_nag.cam-outfrq3s (Overall: NLFAIL)
+TMC_D.f10_f10_mg37.QPC5.izumi_nag.cam-outfrq3s_eoyttrac (Overall: NLFAIL)
+TMC_D.T5_T5_mg37.QPC5.izumi_nag.cam-ghgrmp_e8 (Overall: NLFAIL)
+. diffs in coupler attributes
+
+ERC_D_Ln9.f10_f10_mg37.QPC5.izumi_nag.cam-carma_sea_salt (Overall: DIFF)
+ERC_D_Ln9.f10_f10_mg37.QPC5.izumi_nag.cam-outfrq3s_cosp (Overall: DIFF)
+ERC_D_Ln9.f10_f10_mg37.QPC5.izumi_nag.cam-outfrq3s_subcol (Overall: DIFF)
+ERC_D_Ln9.f10_f10_mg37.QPC6.izumi_nag.cam-outfrq3s_am (Overall: DIFF)
+ERC_D_Ln9.f10_f10_mg37.QPC6.izumi_nag.cam-outfrq3s_cospsathist (Overall: DIFF)
+ERC_D_Ln9.f10_f10_mg37.QPC6.izumi_nag.cam-outfrq3s (Overall: DIFF)
+ERC_D_Ln9.f10_f10_mg37.QPWmaC6.izumi_nag.cam-outfrq3s (Overall: DIFF)
+ERC_D_Ln9.f10_f10_mg37.QSPCAMS.izumi_nag.cam-outfrq3s (Overall: DIFF)
+ERC_D_Ln9.ne16_ne16_mg17.QPC4.izumi_nag.cam-outfrq3s_usecase (Overall: DIFF)
+ERC_D_Ln9.ne16pg3_ne16pg3_mg17.QPC4.izumi_nag.cam-outfrq3s_usecase (Overall: DIFF)
+ERC_D_Ln9.ne5_ne5_mg37.QPC5.izumi_nag.cam-outfrq3s_ttrac (Overall: DIFF)
+ERC_D_Ln9.T5_T5_mg37.QPC4.izumi_nag.cam-outfrq3s_usecase (Overall: DIFF)
+ERI_D_Ln18.f10_f10_mg37.QPC5.izumi_nag.cam-outfrq3s_eoyttrac (Overall: DIFF)
+ERI_D_Ln18.f19_f19_mg17.QPC6.izumi_nag.cam-ghgrmp_e8 (Overall: DIFF)
+ERP_Ln9.ne5pg3_ne5pg3_mg37.QPC6.izumi_nag.cam-outfrq9s_clubbmf (Overall: DIFF)
+PLB_D_Ln9.f10_f10_mg37.QPC5.izumi_nag.cam-ttrac_loadbal0 (Overall: DIFF)
+PLB_D_Ln9.f10_f10_mg37.QPC5.izumi_nag.cam-ttrac_loadbal1 (Overall: DIFF)
+PLB_D_Ln9.f10_f10_mg37.QPC5.izumi_nag.cam-ttrac_loadbal3 (Overall: DIFF)
+PLB_D_Ln9.ne5_ne5_mg37.QPC5.izumi_nag.cam-ttrac_loadbal0 (Overall: DIFF)
+PLB_D_Ln9.ne5_ne5_mg37.QPC5.izumi_nag.cam-ttrac_loadbal1 (Overall: DIFF)
+PLB_D_Ln9.ne5_ne5_mg37.QPC5.izumi_nag.cam-ttrac_loadbal3 (Overall: DIFF)
+SMS_D_Ln3.ne5pg3_ne5pg3_mg37.QPX2000.izumi_nag.cam-outfrq3s (Overall: DIFF)
+SMS_D_Ln6.ne5_ne5_mg37.QPWmaC4.izumi_nag.cam-outfrq3s_physgrid_tem (Overall: DIFF)
+SMS_D_Ln7.T42_T42_mg17.QPSCAMC5.izumi_nag.cam-scmarm (Overall: DIFF)
+SMS_D_Ln9.f10_f10_mg37.QPC5.izumi_nag.cam-rad_diag_mam (Overall: DIFF)
+SMS_D_Ln9.f10_f10_mg37.QPC6.izumi_nag.cam-outfrq3s_ba (Overall: DIFF)
+SMS_P48x1_D_Ln3.f09_f09_mg17.QPC6HIST.izumi_nag.cam-outfrq3s_co2cycle_usecase (Overall: DIFF)
+SUB_D_Ln9.f10_f10_mg37.QPC5.izumi_nag.cam-outfrq3s (Overall: DIFF)
+. diffs in coupler attributes
+. diffs in coupler history file
+
+izumi/gnu/aux_cam:
+
+ERC_D_Ln9.f10_f10_mg37.FADIAB.izumi_gnu.cam-terminator (Overall: NLFAIL)
+ERC_D_Ln9.ne5pg2_ne5pg2_mg37.FADIAB.izumi_gnu.cam-outfrq3s (Overall: NLFAIL)
+ERC_D_Ln9.ne5pg3_ne5pg3_mg37.FADIAB.izumi_gnu.cam-outfrq3s (Overall: NLFAIL)
+ERP_Ln9.ne5_ne5_mg37.FHS94.izumi_gnu.cam-outfrq9s (Overall: NLFAIL)
+PEM_D_Ln9.ne5pg3_ne5pg3_mg37.FADIAB.izumi_gnu.cam-outfrq3s (Overall: NLFAIL)
+SMS_Ld5.f09_f09_mg17.PC6.izumi_gnu.cam-cam6_port_f09_rrtmgp (Overall: NLFAIL)
+. diffs in coupler attributes
+
+ERC_D_Ln9.f10_f10_mg37.QPC4.izumi_gnu.cam-outfrq3s_diags (Overall: DIFF)
+ERC_D_Ln9.f10_f10_mg37.QPC5.izumi_gnu.cam-outfrq3s_unicon (Overall: DIFF)
+ERC_D_Ln9.f10_f10_mg37.QPC5.izumi_gnu.cam-rad_diag (Overall: DIFF)
+ERC_D_Ln9.f10_f10_mg37.QPSPCAMM.izumi_gnu.cam-outfrq3s (Overall: DIFF)
+ERC_D_Ln9.ne5_ne5_mg37.QPC4.izumi_gnu.cam-outfrq3s_nudging_ne5_L26 (Overall: DIFF)
+ERC_D_Ln9.ne5_ne5_mg37.QPC5.izumi_gnu.cam-outfrq3s_ba (Overall: DIFF)
+ERI_D_Ln18.T5_T5_mg37.QPC4.izumi_gnu.cam-co2rmp (Overall: DIFF)
+ERP_D_Ln9.C48_C48_mg17.QPC6.izumi_gnu.cam-outfrq9s (Overall: DIFF)
+ERP_D_Ln9.ne3pg3_ne3pg3_mg37.QPC6.izumi_gnu.cam-outfrq9s_rrtmgp (Overall: DIFF)
+ERP_Ln9.ne5_ne5_mg37.QPC5.izumi_gnu.cam-outfrq9s (Overall: DIFF)
+PLB_D_Ln9.ne5pg3_ne5pg3_mg37.QPC5.izumi_gnu.cam-ttrac_loadbal0 (Overall: DIFF)
+PLB_D_Ln9.ne5pg3_ne5pg3_mg37.QPC5.izumi_gnu.cam-ttrac_loadbal1 (Overall: DIFF)
+PLB_D_Ln9.ne5pg3_ne5pg3_mg37.QPC5.izumi_gnu.cam-ttrac_loadbal3 (Overall: DIFF)
+SCT_D_Ln7.ne3_ne3_mg37.QPC6.izumi_gnu.cam-scm_prep_c6 (Overall: DIFF)
+SCT_D_Ln7.T42_T42_mg17.QPC4.izumi_gnu.cam-scm_prep (Overall: DIFF)
+SCT_D_Ln7.T42_T42_mg17.QPC6.izumi_gnu.cam-scm_prep_c6 (Overall: DIFF)
+SMS_D_Ln3.f10_f10_mg37.QPMOZ.izumi_gnu.cam-outfrq3s_chemproc (Overall: DIFF)
+SMS_D_Ln9.f10_f10_mg37.QPWmaC4.izumi_gnu.cam-outfrq9s_apmee (Overall: DIFF)
+SMS_D_Ln9.ne5pg3_ne5pg3_mg37.QPC5.izumi_gnu.cam-outfrq3s_ttrac (Overall: DIFF)
+. diffs in coupler attributes
+. diffs in coupler history file
+
+SMS_P48x1_D_Ln9.f19_f19_mg17.FW4madSD.izumi_gnu.cam-outfrq9s (Overall: DIFF)
+. diffs in coupler attributes and clm namelist
+. diffs in cam, clm, and cpl history files
+
+CAM tag used for the baseline comparison tests if different than previous
+tag:
+
+Summarize any changes to answers:
+  - Simple models and aquaplanet are BFB.
+  - F compsets have answer changes due to updated CTSM.
+
+===============================================================
+
 Tag name: cam6_4_038
 Originator(s): lizziel
 Date: 1 Oct 2024