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1 | 1 | # DO NOT EDIT, GENERATED AUTOMATICALLY |
2 | 2 |
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| 3 | +- id: doi:10.5281/zenodo.15597460 |
| 4 | + title: hetionet-analysis |
| 5 | + authors: |
| 6 | + - Sutanu Nandi |
| 7 | + - Negar Janani |
| 8 | + - Dave Bunten |
| 9 | + - Casey Greene |
| 10 | + publisher: Zenodo |
| 11 | + date: '2025-06-05' |
| 12 | + link: https://doi.org/g9pm9s |
| 13 | + orcid: 0000-0001-8713-9213 |
| 14 | + member: casey-greene |
| 15 | + plugin: orcid.py |
| 16 | + file: orcid.yaml |
| 17 | +- id: doi:10.5281/zenodo.15485442 |
| 18 | + title: Manubot AI Editor |
| 19 | + authors: |
| 20 | + - Milton Pividori |
| 21 | + - Faisal Alquaddoomi |
| 22 | + - Vincent Rubinetti |
| 23 | + - Dave Bunten |
| 24 | + - Casey Greene |
| 25 | + publisher: Zenodo |
| 26 | + date: '2025-05-21' |
| 27 | + link: https://doi.org/g9k849 |
| 28 | + orcid: 0000-0001-8713-9213 |
| 29 | + member: casey-greene |
| 30 | + plugin: orcid.py |
| 31 | + file: orcid.yaml |
3 | 32 | - id: doi:10.5281/zenodo.15122187 |
4 | 33 | title: Human Microbiome Compendium dataset |
5 | 34 | authors: |
|
44 | 73 | - Sean Davis |
45 | 74 | - Ran Blekhman |
46 | 75 | publisher: Zenodo |
47 | | - date: '2024-09-16' |
| 76 | + date: '2025-04-01' |
48 | 77 | link: https://doi.org/gsvhxn |
49 | 78 | orcid: 0000-0001-8713-9213 |
50 | 79 | member: casey-greene |
|
86 | 115 | - Dave Bunten |
87 | 116 | - Casey Greene |
88 | 117 | publisher: Zenodo |
89 | | - date: '2025-02-22' |
| 118 | + date: '2025-05-21' |
90 | 119 | link: https://doi.org/g855cq |
91 | 120 | orcid: 0000-0001-8713-9213 |
92 | 121 | member: casey-greene |
|
1297 | 1326 | member: casey-greene |
1298 | 1327 | plugin: orcid.py |
1299 | 1328 | file: orcid.yaml |
| 1329 | +- id: doi:10.5524/102479 |
| 1330 | + title: 'Supporting data for "The probability of edge existence due to node degree: |
| 1331 | + a baseline for network-based predictions"' |
| 1332 | + authors: |
| 1333 | + - Michael Zietz |
| 1334 | + - Daniel, S Himmelstein |
| 1335 | + - Kyle Kloster |
| 1336 | + - Christopher Williams |
| 1337 | + - Michael, W Nagle |
| 1338 | + - Casey, S Greene |
| 1339 | + publisher: GigaScience Database |
| 1340 | + date: '2023-01-01' |
| 1341 | + link: https://doi.org/gs9sq5 |
| 1342 | + orcid: 0000-0001-8713-9213 |
| 1343 | + member: casey-greene |
| 1344 | + plugin: orcid.py |
| 1345 | + file: orcid.yaml |
1300 | 1346 | - id: doi:10.1128/msystems.00928-22 |
1301 | 1347 | title: The Coming of Age of Nucleic Acid Vaccines during COVID-19 |
1302 | 1348 | authors: |
|
1914 | 1960 | tags: |
1915 | 1961 | - machine learning |
1916 | 1962 | - diversity |
| 1963 | +- id: doi:10.17615/vzc0-qk25 |
| 1964 | + title: 'Author Correction: Community-wide hackathons to identify central themes |
| 1965 | + in single-cell multi-omics' |
| 1966 | + authors: [] |
| 1967 | + publisher: Springer Nature |
| 1968 | + date: '2021-01-01' |
| 1969 | + link: https://doi.org/g9kjv4 |
| 1970 | + orcid: 0000-0001-8713-9213 |
| 1971 | + member: casey-greene |
| 1972 | + plugin: orcid.py |
| 1973 | + file: orcid.yaml |
1917 | 1974 | - id: doi:10.1186/s13059-021-02468-y |
1918 | 1975 | title: 'Author Correction: Community-wide hackathons to identify central themes |
1919 | 1976 | in single-cell multi-omics' |
|
2201 | 2258 | - type: preprint |
2202 | 2259 | - type: medRxiv |
2203 | 2260 | link: https://www.biorxiv.org/content/2021.06.23.21259416 |
| 2261 | +- id: doi:10.17615/edpt-y058 |
| 2262 | + title: 'Characterizing Long COVID: Deep Phenotype of a Complex Condition' |
| 2263 | + authors: [] |
| 2264 | + publisher: Elsevier |
| 2265 | + date: '2021-01-01' |
| 2266 | + link: https://doi.org/g9kjv5 |
| 2267 | + orcid: 0000-0001-8713-9213 |
| 2268 | + member: casey-greene |
| 2269 | + plugin: orcid.py |
| 2270 | + file: orcid.yaml |
2204 | 2271 | - id: doi:10.1186/s13059-021-02433-9 |
2205 | 2272 | title: Community-wide hackathons to identify central themes in single-cell multi-omics |
2206 | 2273 | authors: |
|
2243 | 2310 | plugin: sources.py |
2244 | 2311 | file: sources.yaml |
2245 | 2312 | image: https://media.springernature.com/full/springer-static/image/art%3A10.1186%2Fs13059-021-02433-9/MediaObjects/13059_2021_2433_Fig4_HTML.png |
| 2313 | +- id: doi:10.17615/96cj-z232 |
| 2314 | + title: Community-wide hackathons to identify central themes in single-cell multi-omics |
| 2315 | + authors: [] |
| 2316 | + publisher: Springer Nature |
| 2317 | + date: '2021-01-01' |
| 2318 | + link: https://doi.org/g9kjv6 |
| 2319 | + orcid: 0000-0001-8713-9213 |
| 2320 | + member: casey-greene |
| 2321 | + plugin: orcid.py |
| 2322 | + file: orcid.yaml |
2246 | 2323 | - id: doi:10.1128/mSystems.00122-21 |
2247 | 2324 | title: Dietary Supplements and Nutraceuticals under Investigation for COVID-19 Prevention |
2248 | 2325 | and Treatment |
|
2625 | 2702 | tags: |
2626 | 2703 | - reproducibility |
2627 | 2704 | - machine learning |
| 2705 | +- id: doi:10.5524/100921 |
| 2706 | + title: Supporting data for "Genetic demultiplexing of pooled single-cell RNA-sequencing |
| 2707 | + samples in cancer facilitates effective experimental design" |
| 2708 | + authors: |
| 2709 | + - Lukas, M Weber |
| 2710 | + - Ariel, A Hippen |
| 2711 | + - Peter, F Hickey |
| 2712 | + - Kristofer, C Berrett |
| 2713 | + - Jason Gertz |
| 2714 | + - Jennifer, Anne Doherty |
| 2715 | + - Casey, S Greene |
| 2716 | + - Stephanie, C Hicks |
| 2717 | + publisher: GigaScience Database |
| 2718 | + date: '2021-01-01' |
| 2719 | + link: https://doi.org/g9mwd9 |
| 2720 | + orcid: 0000-0001-8713-9213 |
| 2721 | + member: casey-greene |
| 2722 | + plugin: orcid.py |
| 2723 | + file: orcid.yaml |
2628 | 2724 | - id: doi:10.48550/arxiv.2105.14372 |
2629 | 2725 | title: Ten Quick Tips for Deep Learning in Biology |
2630 | 2726 | authors: |
|
9725 | 9821 | - Sean Davis |
9726 | 9822 | - Ran Blekhman |
9727 | 9823 | publisher: Cell |
9728 | | - date: '2025-01-01' |
| 9824 | + date: '2025-02-01' |
9729 | 9825 | link: https://doi.org/g82tvz |
9730 | 9826 | image: https://greenelab.com/images/research/405730965-4a33a603-dce7-4e31-a9fc-d2a939892749.jpg |
9731 | 9827 | plugin: sources.py |
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