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utils.py python 3 version #11

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utils.py python 3 version #11

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14 changes: 9 additions & 5 deletions utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@
import math
import random
import os
import cPickle as pickle
import _pickle as pickle
import xml.etree.ElementTree as ET

from utils import *
Expand Down Expand Up @@ -208,9 +208,13 @@ def to_one_hot(s, ascii_steps, alphabet):
if len(seq) >= ascii_steps:
seq = seq[:ascii_steps]
else:
seq = seq + [0]*(ascii_steps - len(seq))
one_hot = np.zeros((ascii_steps,len(alphabet)+1))
one_hot[np.arange(ascii_steps),seq] = 1
#print(ascii_steps - len(seq))
seq = seq + np.multiply([0],(ascii_steps - len(seq)))
one_hot = np.zeros((int(ascii_steps),len(alphabet)+1))
seq=np.array(seq,dtype=int)
seq=np.pad(seq,(0,len(np.arange(ascii_steps))-len(seq)))

one_hot[np.arange(ascii_steps,dtype=int),seq] = 1
return one_hot

# abstraction for logging
Expand All @@ -221,6 +225,6 @@ def __init__(self, args):

def write(self, s, print_it=True):
if print_it:
print s
print(s)
with open(self.logf, 'a') as f:
f.write(s + "\n")