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PSMatch 1.11

PSMatch 1.11.3

Replace addFragments with labelFragments. PR #20

PSMatch 1.11.2

Replace calculateFragments with calculateFragments2. PR #19

PSMatch 1.11.1

New calculateFragments2 function includes fixed and variable modifications to fragments ions. PR #16

PSMatch 1.11.0

New devel version

PSMatch 1.9

PSMatch 1.9.1

Fix check errors.

PSMatch 1.9.0

New Bioc devel.

PSMatch 1.7

PSMatch 1.7.2

Fix connected component dim names in show().

PSMatch 1.7.1

In addFragments() use ... to pass parameters to calculateFragments().

PSMatch 1.7.0

New Bioc devel.

PSMatch 1.5

PSMatch 1.5.0

New Bioc devel.

PSMatch 1.3

PSMatch 1.3.3

New fdr variable (default is always NA_character_ for now) that defines the spectrum FDR (or any similar/relevant metric that can be used for filtering - see next item).
New filterPsmFdr() function that filters based on the fdr variable.

PSMatch 1.3.2

Specific Matrix::rowSums() to fix error in example.

PSMatch 1.3.1

Fix type in vignette.

PSMatch 1.0

PSMatch 1.0.0

First Bioconductor release.

PSMatch 0.99

Changes in 0.99.5

Fix mz calculation in calculateFragments for neutral losses with a charge > 1 (ported from MSnbase - see issue 573).

Changes in 0.99.4

Set seed in the ConnectedComponents unit test to stop random errors after clustering.

Changes in 0.99.3

Fix bug in describePeptides() (close #11).

Changes in 0.99.2

Describe the ConnectedComponents() return value.
Add/update installation instructions.

Changes in 0.99.1

Fix typo and improve documentation.

Changes in 0.99.0

Prepare package for Bioconductor submission.