Reorganize repository documentation and configuration

- Restructure documentation into `docs/spec/` and `docs/guide/`.
- Update `AGENTS.md` with strict execution and language rules.
- Add `Makefile.toml` for standardized `cargo make` tasks.
- Add `docs/guide/development/languages/rust.md` with style rules.
- Update `.gitignore` and `.taplo.toml` for better workspace hygiene.
- Update `Cargo.lock` dependencies.

Author: aurexav

.gitignore

@@ -1,36 +1,57 @@
 # AI
 .codex
-.orchestrator
 .specify
+.worktrees
 
 # Editor
 .vscode
+.zed
 
 # Language Specifics
 
 ## JavaScript/TypeScript
+!.yarn/patches
+!.yarn/plugins
+!.yarn/releases
+!.yarn/versions
+*.tsbuildinfo
+.next
+.pnp
+.pnp.*
+.pnpm-debug.log*
+.vercel
+.vite
+.yarn/*
+build
+coverage
+dist
+next-env.d.ts
 node_modules
+npm-debug.log*
+out/
+yarn-debug.log*
+yarn-error.log*
 
 ## Python
-__pycache__
+.pytest_cache
 .ruff_cache
 .venv
+__pycache__
 
 ## Rust
 target
-debug
-release
-*.rs.bk
-*.rlib
-*.prof*
-.idea/
+
+## Swift
+.build
+xcuserdata
 
 # System
 .DS_Store
 
 # General Ignores
 *.bak
-.env*
 *.log
-.env
+.env*
+.turbo
+model
 tmp

.taplo.toml

@@ -1,3 +1,8 @@
+exclude = [
+	".worktree",
+	"Makefile.toml",
+]
+
 [formatting]
 align_comments       = true
 align_entries        = true