scPrediXcan/scPrediXcan_mac_env.yml at master · hakyimlab/scPrediXcan · GitHub

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name: scPrediXcan
channels:
  - conda-forge
  - defaults
dependencies:
  - python=3.10
  - pip
  - numpy<2
  - pandas
  - scipy
  - scikit-learn
  - matplotlib
  - ipython
  - ipykernel
  - jupyter
  - notebook
  - h5py
  - protobuf
  - networkx
  - matplotlib-inline
  - openjdk=17
  - r-base
  - r-essentials
  - r-rsqlite
  - r-dplyr
  - r-data.table
  - r-optparse
  - pip:
      - zenodo_get
      - torch
      - torchvision
      - torchaudio
      - absl-py==2.1.0
      - astunparse==1.6.3
      - certifi==2024.7.4
      - charset-normalizer==3.3.2
      - contourpy==1.2.1
      - cycler==0.12.1
      - filelock==3.15.4
      - flatbuffers==24.3.25
      - fonttools==4.53.1
      - fsspec==2024.6.1
      - gast==0.6.0
      - google-pasta==0.2.0
      - grpcio==1.65.4
      - idna==3.7
      - jinja2==3.1.4
      - joblib==1.4.2
      - kiwisolver==1.4.5
      - libclang==18.1.1
      - markdown==3.6
      - markdown-it-py==3.0.0
      - markupsafe==2.1.5
      - mdurl==0.1.2
      - ml-dtypes==0.4.0
      - mpmath==1.3.0
      - namex==0.0.8
      - nextflow==24.4.3
      - opt-einsum==3.3.0
      - optree==0.12.1
      - pillow==10.4.0
      - pytz==2024.1
      - rich==13.7.1
      - sympy==1.13.2
      - tensorboard==2.17.0
      - tensorboard-data-server==0.7.2
      - tensorflow-io-gcs-filesystem==0.37.1
      - termcolor==2.4.0
      - threadpoolctl==3.5.0
      - urllib3==2.2.2
      - werkzeug==3.0.3
      - wrapt==1.16.0