plot_assemblies.inputs.json

{
    "PlotAssemblies.populations": "/storage1/fs1/ccdg/Active/analysis/ref_grant/assembly_analysis_20200220/populations.txt",
    "PlotAssemblies.assembly_list": "/storage1/fs1/ccdg/Active/analysis/ref_grant/assembly_analysis_20200220/round1_assemblies/assembly_list.txt",
    "PlotAssemblies.ref": "/storage1/fs1/ccdg/Active/analysis/ref_grant/assembly_analysis_20200220/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna",
    "PlotAssemblies.ref_index": "/storage1/fs1/ccdg/Active/analysis/ref_grant/assembly_analysis_20200220/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.fai",
    "PlotAssemblies.truth_list_snp_indel": "/storage1/fs1/ccdg/Active/analysis/ref_grant/assembly_analysis_20200220/assembly_validation/truth_sets/truth_list_snp_indel.txt",
    "PlotAssemblies.truth_list_confident_region": "/storage1/fs1/ccdg/Active/analysis/ref_grant/assembly_analysis_20200220/assembly_validation/truth_sets/truth_list_confident_region.txt",
    "PlotAssemblies.truth_list_sv_vcf": "/storage1/fs1/ccdg/Active/analysis/ref_grant/assembly_analysis_20200220/assembly_validation/truth_sets/truth_list_sv_vcf.txt",
    "PlotAssemblies.truth_list_sv_confident_region": "/storage1/fs1/ccdg/Active/analysis/ref_grant/assembly_analysis_20200220/assembly_validation/truth_sets/truth_list_sv_confident_region.txt",
    "PlotAssemblies.gap_file": "/storage1/fs1/ccdg/Active/analysis/ref_grant/assembly_analysis_20200220/igv_tracks/ira_b38_061117/gap.053117.b38.sorted.bed",
    "PlotAssemblies.str_track": "/storage1/fs1/ccdg/Active/analysis/ref_grant/assembly_analysis_20200220/igv_tracks/ira_b38_061117/simpleRepeat.b38.sorted.bed",
    "PlotAssemblies.seg_dup_track": "/storage1/fs1/ccdg/Active/analysis/ref_grant/assembly_analysis_20200220/igv_tracks/ira_b38_061117/genomicSuperDups.b38.sorted.bed",
    "PlotAssemblies.jupyter_notebook_template": "/storage1/fs1/ccdg/Active/analysis/ref_grant/assembly_analysis_20200220/assembly_validation/VariantCalling.ipynb"
}