python/examples/notebooks/DeconvolutionLab2 - Benchmarking.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Performance Benchmarking vs DeconvolutionLab2\n",
    "\n",
    "The purpose of this notebook is to examine performance differences between Flowdec and DeconvolutionLab2 on arbitrary test data.\n",
    "\n",
    "**Note**: This example is only for illustration and will not be reproducible as-is unless you build this [DeconvolutionLab2 Fork](https://github.com/hadim/DeconvolutionLab2) with CUDA support locally and change the DL2_PATH variable below.\n",
    "\n",
    "At TOW, this was executed on a system with these specs:\n",
    "- Windows 10 Pro\n",
    "- 64G RAM\n",
    "- Intel Xeon CPU (x2)\n",
    "- Nvidia GTX 1080 GPU (x2)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 69,
   "metadata": {},
   "outputs": [],
   "source": [
    "import tempfile, os, warnings, timeit\n",
    "import pandas as pd\n",
    "import numpy as np\n",
    "from skimage import io\n",
    "from flowdec import data as fd_data\n",
    "from flowdec import psf as fd_psf\n",
    "from flowdec import restoration as fd_restoration\n",
    "\n",
    "DL2_PATH = os.path.join(os.path.expanduser('~'), \n",
    "    'repos', 'misc', 'DeconvolutionLab2', 'target', 'DeconcolutionLab2_-0.1.0-SNAPSHOT.jar')\n",
    "N_ITER = 25 # Number of RL iterations"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 38,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "((11, 1024, 1024), (11, 1024, 1024))"
      ]
     },
     "execution_count": 38,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# Generate a PSF and some random data to test executions times with\n",
    "kernel = fd_psf.GibsonLanni(size_x=1024, size_y=1024, size_z=11).generate().astype(np.float32)\n",
    "np.random.seed(1)\n",
    "data = np.random.poisson(lam=100, size=kernel.shape).astype(kernel.dtype)\n",
    "data.shape, kernel.shape, data.dtype, kernel.dtype"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 40,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "('data-beuslrkm.tif', 'kernel-cifeljyp.tif')"
      ]
     },
     "execution_count": 40,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# Generate temporary files to store image data within\n",
    "data_file, kernel_file = tempfile.mktemp('.tif', 'data-'), tempfile.mktemp('.tif', 'kernel-')\n",
    "\n",
    "# Ignore low-contrast image warnings from skimage\n",
    "with warnings.catch_warnings():\n",
    "    warnings.simplefilter(\"ignore\")\n",
    "    io.imsave(data_file, data)\n",
    "    io.imsave(kernel_file, kernel)\n",
    "    \n",
    "os.path.basename(data_file), os.path.basename(kernel_file)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Benchmarking Functions"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 41,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Deconvolution Lab 2 Functions\n",
    "\n",
    "# Setup system call to execute DL2 CLI\n",
    "dl2_cmd = \"java -cp {jar} DeconvolutionLab2 Run -image file {data} -psf file {psf} -algorithm RL {niter}\"\\\n",
    "    .format(jar=DL2_PATH, data=data_file, psf=kernel_file, niter=N_ITER)\n",
    "     \n",
    "def run_dl2():\n",
    "    !$dl2_cmd"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 96,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Flowdec Functions\n",
    "\n",
    "algo = fd_restoration.RichardsonLucyDeconvolver(data.ndim).initialize()\n",
    "acq = fd_data.Acquisition(data=data, kernel=kernel)\n",
    "\n",
    "def run_flowdec_best_case():\n",
    "    \"\"\" Use pre-defined TF graph and memory-resident data \"\"\"\n",
    "    algo.run(acq, niter=N_ITER)\n",
    "    \n",
    "def run_flowdec_worst_case():\n",
    "    \"\"\" Redefine TF graph and load data from files \"\"\"\n",
    "    fd_restoration.RichardsonLucyDeconvolver(data.ndim).initialize().run(\n",
    "        fd_data.Acquisition(data=io.imread(data_file), kernel=io.imread(kernel_file)),\n",
    "        niter=N_ITER\n",
    "    )"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 97,
   "metadata": {},
   "outputs": [],
   "source": [
    "def benchmark(fn, n):\n",
    "    times = np.array(timeit.repeat(fn, repeat=n, number=1)) * 1000\n",
    "    return 'mean ± std  : {:.2f} ms ± {:.2f} ms\\n'\\\n",
    "            'min - max   : {:.2f} ms - {:.2f} ms\\n'\\\n",
    "            'n iterations: {}'\\\n",
    "        .format(times.mean(), times.std(), times.min(), times.max(), n)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Benchmark Results"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 98,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "mean ± std  : 674.32 ms ± 13.13 ms\n",
      "min - max   : 656.22 ms - 687.69 ms\n",
      "n iterations: 10\n"
     ]
    }
   ],
   "source": [
    "print(benchmark(run_flowdec_best_case, 10))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 99,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "mean ± std  : 783.12 ms ± 20.30 ms\n",
      "min - max   : 744.78 ms - 807.40 ms\n",
      "n iterations: 10\n"
     ]
    }
   ],
   "source": [
    "print(benchmark(run_flowdec_worst_case, 10))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 94,
   "metadata": {
    "scrolled": true
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Starting run\n",
      "Log   \t 1692.04 us \t   30.7Mb  \t AcademicFFT Added\n",
      "JTransformsLibrary\n",
      "Log   \t 30.05 ms \t   36.1Mb  \t JTransforms Added\n",
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      "JCuFFTLibrary\n",
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      "Log   \t 700.85 ms \t  244.4Mb  \t Load C:\\Users\\User\\AppData\\Local\\Temp\\kernel-cifeljyp.tif\n",
      "Log   \t 702.02 ms \t  244.4Mb  \t Open PSF file C:\\Users\\User\\AppData\\Local\\Temp\\kernel-cifeljyp.tif\n",
      "Log   \t 703.13 ms \t  244.4Mb  \t Path: C:\\Users\\User\\repos\\flowdec\\python\\examples\\notebooks (writable)\n",
      "Log   \t 703.64 ms \t  244.4Mb  \t Algorithm: Richardson-Lucy\n",
      "Log   \t 851.18 ms \t  152.5Mb  \t Input: 1024x1024x11 \n",
      "Log   \t 980.42 ms \t  201.6Mb  \t PSF: 1024x1024x11  normalized 1.0\n",
      "Log   \t 981.29 ms \t  201.6Mb  \t RL is starting (25 iterations)\n",
      "Log   \t 1919.74 ms \t  194.0Mb  \t JCuFFT initialized for [1024x1024x11]\n",
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      "Log   \t 1940.52 ms \t  210.7Mb  \t RL(25.0000)\n",
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      "Log   \t 36.55 s \t 1861.0Mb  \t Stopped>> by iteration 25 > 25\n",
      "Log   \t 36.64 s \t 1910.9Mb  \t Time:  35.5 s Peak:3.6 Gb\n",
      "Log   \t 36.65 s \t 1910.9Mb  \t Richardson-Lucy is finished\n",
      "Log   \t 36.65 s \t 1910.9Mb  \t Show Real Signal Final Display of RL\n",
      "Log   \t 36.72 s \t 1954.2Mb  \t End of RL in  35.5 s and 3.6 Gb\n",
      "End\n",
      "Starting run\n",
      "Log   \t 1682.78 us \t   30.7Mb  \t AcademicFFT Added\n",
      "JTransformsLibrary\n",
      "Log   \t 29.96 ms \t   36.1Mb  \t JTransforms Added\n",
      "Log   \t 32.08 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\repos\\misc\\DeconvolutionLab2\\target\\FFTW\\\n",
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      "JCuFFTLibrary\n",
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      "Log   \t 718.75 ms \t  244.4Mb  \t Path: C:\\Users\\User\\repos\\flowdec\\python\\examples\\notebooks (writable)\n",
      "Log   \t 719.09 ms \t  244.4Mb  \t Algorithm: Richardson-Lucy\n",
      "Log   \t 860.95 ms \t  152.4Mb  \t Input: 1024x1024x11 \n",
      "Log   \t 986.95 ms \t  199.0Mb  \t PSF: 1024x1024x11  normalized 1.0\n",
      "Log   \t 988.22 ms \t  201.5Mb  \t RL is starting (25 iterations)\n",
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      "Log   \t 38.38 s \t 1848.1Mb  \t Stopped>> by iteration 25 > 25\n",
      "Log   \t 38.48 s \t 1921.4Mb  \t Time:  37.3 s Peak:3.5 Gb\n",
      "Log   \t 38.49 s \t 1921.4Mb  \t Richardson-Lucy is finished\n",
      "Log   \t 38.49 s \t 1921.4Mb  \t Show Real Signal Final Display of RL\n",
      "Log   \t 38.58 s \t 1962.9Mb  \t End of RL in  37.4 s and 3.5 Gb\n",
      "End\n",
      "Starting run\n",
      "Log   \t 1842.72 us \t   30.7Mb  \t AcademicFFT Added\n",
      "JTransformsLibrary\n",
      "Log   \t 30.10 ms \t   36.1Mb  \t JTransforms Added\n",
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      "JCuFFTLibrary\n",
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      "Log   \t 695.30 ms \t  244.4Mb  \t Path: C:\\Users\\User\\repos\\flowdec\\python\\examples\\notebooks (writable)\n",
      "Log   \t 695.63 ms \t  244.4Mb  \t Algorithm: Richardson-Lucy\n",
      "Log   \t 845.12 ms \t  152.5Mb  \t Input: 1024x1024x11 \n",
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      "Log   \t 36.02 s \t 1731.9Mb  \t Stopped>> by iteration 25 > 25\n",
      "Log   \t 36.13 s \t 1819.7Mb  \t Time:  35.0 s Peak:3.6 Gb\n",
      "Log   \t 36.13 s \t 1819.7Mb  \t Richardson-Lucy is finished\n",
      "Log   \t 36.13 s \t 1819.7Mb  \t Show Real Signal Final Display of RL\n",
      "Log   \t 36.20 s \t 1862.6Mb  \t End of RL in  35.1 s and 3.6 Gb\n",
      "End\n",
      "Starting run\n",
      "Log   \t 1794.44 us \t   30.7Mb  \t AcademicFFT Added\n",
      "JTransformsLibrary\n",
      "Log   \t 30.54 ms \t   36.1Mb  \t JTransforms Added\n",
      "Log   \t 32.75 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\repos\\misc\\DeconvolutionLab2\\target\\FFTW\\\n",
      "Log   \t 33.09 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\repos\\misc\\DeconvolutionLab2\\target\\\n",
      "Log   \t 33.37 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\FFTW\\\n",
      "Log   \t 33.63 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\\n",
      "Log   \t 33.84 ms \t   36.1Mb  \t FFTW not found\n",
      "JCuFFTLibrary\n",
      "Log   \t 945.80 ms \t   36.1Mb  \t JCuFFT Added\n",
      "Log   \t 578.06 ms \t  154.9Mb  \t Load C:\\Users\\User\\AppData\\Local\\Temp\\data-beuslrkm.tif\n",
      "Log   \t 579.03 ms \t  154.9Mb  \t Open image file C:\\Users\\User\\AppData\\Local\\Temp\\data-beuslrkm.tif\n",
      "Log   \t 579.43 ms \t  154.9Mb  \t Image: 1024x1024x11 \n",
      "Log   \t 699.77 ms \t  244.4Mb  \t Load C:\\Users\\User\\AppData\\Local\\Temp\\kernel-cifeljyp.tif\n",
      "Log   \t 700.61 ms \t  244.4Mb  \t Open PSF file C:\\Users\\User\\AppData\\Local\\Temp\\kernel-cifeljyp.tif\n",
      "Log   \t 701.27 ms \t  244.4Mb  \t Path: C:\\Users\\User\\repos\\flowdec\\python\\examples\\notebooks (writable)\n",
      "Log   \t 701.60 ms \t  244.4Mb  \t Algorithm: Richardson-Lucy\n",
      "Log   \t 850.32 ms \t  152.6Mb  \t Input: 1024x1024x11 \n",
      "Log   \t 978.07 ms \t  201.7Mb  \t PSF: 1024x1024x11  normalized 1.0\n",
      "Log   \t 978.94 ms \t  201.7Mb  \t RL is starting (25 iterations)\n",
      "Log   \t 1593.33 ms \t  356.8Mb  \t JCuFFT initialized for [1024x1024x11]\n",
      "Log   \t 1594.04 ms \t  356.8Mb  \t RL data ready\n",
      "Log   \t 1595.92 ms \t  356.8Mb  \t RL(25.0000)\n",
      "Log   \t 2274.10 ms \t  688.2Mb  \t @1 Time:   1.1 s\n",
      "Log   \t 4.25 s \t  677.5Mb  \t @2 Time:   3.1 s\n",
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      "Log   \t 8.50 s \t 1444.6Mb  \t @5 Time:   7.4 s\n",
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      "Log   \t 11.63 s \t 1561.2Mb  \t @7 Time:  10.5 s\n",
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      "Log   \t 16.28 s \t 1480.8Mb  \t @10 Time:  15.1 s\n",
      "Log   \t 17.58 s \t 2008.8Mb  \t @11 Time:  16.4 s\n",
      "Log   \t 19.12 s \t  977.3Mb  \t @12 Time:  18.0 s\n",
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      "Log   \t 21.63 s \t 2034.0Mb  \t @14 Time:  20.5 s\n",
      "Log   \t 22.86 s \t 2578.4Mb  \t @15 Time:  21.7 s\n",
      "Log   \t 24.27 s \t 3114.7Mb  \t @16 Time:  23.1 s\n",
      "Log   \t 25.85 s \t 3659.1Mb  \t @17 Time:  24.7 s\n",
      "Log   \t 27.23 s \t 1145.9Mb  \t @18 Time:  26.1 s\n",
      "Log   \t 28.56 s \t 1675.4Mb  \t @19 Time:  27.4 s\n",
      "Log   \t 29.86 s \t 2203.4Mb  \t @20 Time:  28.7 s\n",
      "Log   \t 31.14 s \t 2731.4Mb  \t @21 Time:  30.0 s\n",
      "Log   \t 32.43 s \t 3259.4Mb  \t @22 Time:  31.3 s\n",
      "Log   \t 33.81 s \t 3792.9Mb  \t @23 Time:  32.7 s\n",
      "Log   \t 35.09 s \t 1334.0Mb  \t @24 Time:  34.0 s\n",
      "Log   \t 36.38 s \t 1863.4Mb  \t @25 Time:  35.2 s\n",
      "Log   \t 36.43 s \t 1863.4Mb  \t Stopped>> by iteration 25 > 25\n",
      "Log   \t 36.53 s \t 1939.1Mb  \t Time:  35.4 s Peak:3.5 Gb\n",
      "Log   \t 36.53 s \t 1939.1Mb  \t Richardson-Lucy is finished\n",
      "Log   \t 36.53 s \t 1939.1Mb  \t Show Real Signal Final Display of RL\n",
      "Log   \t 36.60 s \t 1981.8Mb  \t End of RL in  35.5 s and 3.5 Gb\n",
      "End\n",
      "Starting run\n",
      "Log   \t 1791.03 us \t   25.6Mb  \t AcademicFFT Added\n",
      "JTransformsLibrary\n",
      "Log   \t 29.60 ms \t   31.0Mb  \t JTransforms Added\n",
      "Log   \t 31.77 ms \t   31.0Mb  \t FFTW Widsom not found in : C:\\Users\\User\\repos\\misc\\DeconvolutionLab2\\target\\FFTW\\\n",
      "Log   \t 32.09 ms \t   31.0Mb  \t FFTW Widsom not found in : C:\\Users\\User\\repos\\misc\\DeconvolutionLab2\\target\\\n",
      "Log   \t 32.36 ms \t   31.0Mb  \t FFTW Widsom not found in : C:\\Users\\User\\FFTW\\\n",
      "Log   \t 32.61 ms \t   31.0Mb  \t FFTW Widsom not found in : C:\\Users\\User\\\n",
      "Log   \t 32.81 ms \t   31.0Mb  \t FFTW not found\n",
      "JCuFFTLibrary\n",
      "Log   \t 937.41 ms \t   31.0Mb  \t JCuFFT Added\n",
      "Log   \t 566.88 ms \t  154.9Mb  \t Load C:\\Users\\User\\AppData\\Local\\Temp\\data-beuslrkm.tif\n",
      "Log   \t 567.63 ms \t  154.9Mb  \t Open image file C:\\Users\\User\\AppData\\Local\\Temp\\data-beuslrkm.tif\n",
      "Log   \t 568.05 ms \t  154.9Mb  \t Image: 1024x1024x11 \n",
      "Log   \t 686.47 ms \t  244.4Mb  \t Load C:\\Users\\User\\AppData\\Local\\Temp\\kernel-cifeljyp.tif\n",
      "Log   \t 687.44 ms \t  244.4Mb  \t Open PSF file C:\\Users\\User\\AppData\\Local\\Temp\\kernel-cifeljyp.tif\n",
      "Log   \t 688.64 ms \t  244.4Mb  \t Path: C:\\Users\\User\\repos\\flowdec\\python\\examples\\notebooks (writable)\n",
      "Log   \t 689.19 ms \t  244.4Mb  \t Algorithm: Richardson-Lucy\n",
      "Log   \t 833.24 ms \t  152.4Mb  \t Input: 1024x1024x11 \n",
      "Log   \t 954.73 ms \t  199.0Mb  \t PSF: 1024x1024x11  normalized 1.0\n",
      "Log   \t 955.33 ms \t  199.0Mb  \t RL is starting (25 iterations)\n",
      "Log   \t 1828.65 ms \t  356.6Mb  \t JCuFFT initialized for [1024x1024x11]\n",
      "Log   \t 1831.28 ms \t  356.6Mb  \t RL data ready\n",
      "Log   \t 1831.82 ms \t  356.6Mb  \t RL(25.0000)\n",
      "Log   \t 2609.00 ms \t  688.2Mb  \t @1 Time:   1.5 s\n",
      "Log   \t 4.65 s \t  677.6Mb  \t @2 Time:   3.5 s\n",
      "Log   \t 6.27 s \t 1201.6Mb  \t @3 Time:   5.1 s\n",
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      "Log   \t 11.88 s \t 1561.6Mb  \t @7 Time:  10.7 s\n",
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      "Log   \t 16.33 s \t 1477.1Mb  \t @10 Time:  15.2 s\n",
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      "Log   \t 19.09 s \t 2533.1Mb  \t @12 Time:  17.9 s\n",
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      "Log   \t 21.71 s \t 1768.8Mb  \t @14 Time:  20.6 s\n",
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      "Log   \t 24.34 s \t 2849.2Mb  \t @16 Time:  23.2 s\n",
      "Log   \t 25.85 s \t 3385.4Mb  \t @17 Time:  24.7 s\n",
      "Log   \t 27.47 s \t  978.2Mb  \t @18 Time:  26.3 s\n",
      "Log   \t 28.73 s \t 1467.7Mb  \t @19 Time:  27.6 s\n",
      "Log   \t 30.01 s \t 1995.7Mb  \t @20 Time:  28.9 s\n",
      "Log   \t 31.36 s \t 2523.7Mb  \t @21 Time:  30.2 s\n",
      "Log   \t 32.82 s \t 3051.7Mb  \t @22 Time:  31.7 s\n",
      "Log   \t 34.33 s \t 3579.7Mb  \t @23 Time:  33.2 s\n",
      "Log   \t 35.71 s \t  938.2Mb  \t @24 Time:  34.6 s\n",
      "Log   \t 37.08 s \t 1467.6Mb  \t @25 Time:  35.9 s\n",
      "Log   \t 37.18 s \t 1470.8Mb  \t Stopped>> by iteration 25 > 25\n",
      "Log   \t 37.27 s \t 1546.5Mb  \t Time:  36.1 s Peak:3.6 Gb\n",
      "Log   \t 37.27 s \t 1546.5Mb  \t Richardson-Lucy is finished\n",
      "Log   \t 37.27 s \t 1546.5Mb  \t Show Real Signal Final Display of RL\n",
      "Log   \t 37.33 s \t 1596.9Mb  \t End of RL in  36.2 s and 3.6 Gb\n",
      "End\n",
      "Starting run\n",
      "Log   \t 1691.07 us \t   25.6Mb  \t AcademicFFT Added\n",
      "JTransformsLibrary\n",
      "Log   \t 30.14 ms \t   36.1Mb  \t JTransforms Added\n",
      "Log   \t 32.31 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\repos\\misc\\DeconvolutionLab2\\target\\FFTW\\\n",
      "Log   \t 32.63 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\repos\\misc\\DeconvolutionLab2\\target\\\n",
      "Log   \t 32.89 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\FFTW\\\n",
      "Log   \t 33.16 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\\n",
      "Log   \t 33.38 ms \t   36.1Mb  \t FFTW not found\n",
      "JCuFFTLibrary\n",
      "Log   \t 1041.09 ms \t   36.1Mb  \t JCuFFT Added\n",
      "Log   \t 566.21 ms \t  154.9Mb  \t Load C:\\Users\\User\\AppData\\Local\\Temp\\data-beuslrkm.tif\n",
      "Log   \t 567.20 ms \t  154.9Mb  \t Open image file C:\\Users\\User\\AppData\\Local\\Temp\\data-beuslrkm.tif\n",
      "Log   \t 567.59 ms \t  154.9Mb  \t Image: 1024x1024x11 \n",
      "Log   \t 698.53 ms \t  244.4Mb  \t Load C:\\Users\\User\\AppData\\Local\\Temp\\kernel-cifeljyp.tif\n",
      "Log   \t 699.52 ms \t  244.4Mb  \t Open PSF file C:\\Users\\User\\AppData\\Local\\Temp\\kernel-cifeljyp.tif\n",
      "Log   \t 700.48 ms \t  244.4Mb  \t Path: C:\\Users\\User\\repos\\flowdec\\python\\examples\\notebooks (writable)\n",
      "Log   \t 701.05 ms \t  244.4Mb  \t Algorithm: Richardson-Lucy\n",
      "Log   \t 839.53 ms \t  152.6Mb  \t Input: 1024x1024x11 \n",
      "Log   \t 957.22 ms \t  199.2Mb  \t PSF: 1024x1024x11  normalized 1.0\n",
      "Log   \t 958.14 ms \t  199.2Mb  \t RL is starting (25 iterations)\n",
      "Log   \t 1717.76 ms \t  194.0Mb  \t JCuFFT initialized for [1024x1024x11]\n",
      "Log   \t 1736.80 ms \t  207.4Mb  \t RL data ready\n",
      "Log   \t 1737.15 ms \t  207.4Mb  \t RL(25.0000)\n",
      "Log   \t 2867.38 ms \t  494.8Mb  \t @1 Time:   1.8 s\n",
      "Log   \t 4.53 s \t  679.6Mb  \t @2 Time:   3.4 s\n",
      "Log   \t 5.89 s \t 1206.3Mb  \t @3 Time:   4.8 s\n",
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      "Log   \t 8.56 s \t 1453.6Mb  \t @5 Time:   7.5 s\n",
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      "Log   \t 11.37 s \t 1577.9Mb  \t @7 Time:  10.3 s\n",
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      "Log   \t 14.35 s \t  960.3Mb  \t @9 Time:  13.2 s\n",
      "Log   \t 15.71 s \t 1489.6Mb  \t @10 Time:  14.6 s\n",
      "Log   \t 17.01 s \t 2022.4Mb  \t @11 Time:  15.9 s\n",
      "Log   \t 18.48 s \t  994.8Mb  \t @12 Time:  17.4 s\n",
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      "Log   \t 21.02 s \t 2032.3Mb  \t @14 Time:  19.9 s\n",
      "Log   \t 22.32 s \t 2565.8Mb  \t @15 Time:  21.2 s\n",
      "Log   \t 23.69 s \t 3093.8Mb  \t @16 Time:  22.6 s\n",
      "Log   \t 25.22 s \t 3621.8Mb  \t @17 Time:  24.1 s\n",
      "Log   \t 26.65 s \t 1067.0Mb  \t @18 Time:  25.5 s\n",
      "Log   \t 27.94 s \t 1596.0Mb  \t @19 Time:  26.8 s\n",
      "Log   \t 29.25 s \t 2124.0Mb  \t @20 Time:  28.1 s\n",
      "Log   \t 30.55 s \t 2652.0Mb  \t @21 Time:  29.4 s\n",
      "Log   \t 31.83 s \t 3193.0Mb  \t @22 Time:  30.7 s\n",
      "Log   \t 33.14 s \t 3721.0Mb  \t @23 Time:  32.0 s\n",
      "Log   \t 34.67 s \t 1332.2Mb  \t @24 Time:  33.6 s\n",
      "Log   \t 36.02 s \t 1861.1Mb  \t @25 Time:  34.9 s\n",
      "Log   \t 36.07 s \t 1861.1Mb  \t Stopped>> by iteration 25 > 25\n",
      "Log   \t 36.17 s \t 1911.2Mb  \t Time:  35.1 s Peak:3.6 Gb\n",
      "Log   \t 36.17 s \t 1911.2Mb  \t Richardson-Lucy is finished\n",
      "Log   \t 36.17 s \t 1911.2Mb  \t Show Real Signal Final Display of RL\n",
      "Log   \t 36.24 s \t 1954.5Mb  \t End of RL in  35.1 s and 3.6 Gb\n",
      "End\n",
      "Starting run\n",
      "Log   \t 2841.85 us \t   30.7Mb  \t AcademicFFT Added\n",
      "JTransformsLibrary\n",
      "Log   \t 39.69 ms \t   36.1Mb  \t JTransforms Added\n",
      "Log   \t 41.96 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\repos\\misc\\DeconvolutionLab2\\target\\FFTW\\\n",
      "Log   \t 42.30 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\repos\\misc\\DeconvolutionLab2\\target\\\n",
      "Log   \t 42.58 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\FFTW\\\n",
      "Log   \t 42.87 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\\n",
      "Log   \t 43.08 ms \t   36.1Mb  \t FFTW not found\n",
      "JCuFFTLibrary\n",
      "Log   \t 1038.70 ms \t   36.1Mb  \t JCuFFT Added\n",
      "Log   \t 583.10 ms \t  154.9Mb  \t Load C:\\Users\\User\\AppData\\Local\\Temp\\data-beuslrkm.tif\n",
      "Log   \t 584.08 ms \t  154.9Mb  \t Open image file C:\\Users\\User\\AppData\\Local\\Temp\\data-beuslrkm.tif\n",
      "Log   \t 584.49 ms \t  154.9Mb  \t Image: 1024x1024x11 \n",
      "Log   \t 703.07 ms \t  244.4Mb  \t Load C:\\Users\\User\\AppData\\Local\\Temp\\kernel-cifeljyp.tif\n",
      "Log   \t 703.51 ms \t  244.4Mb  \t Open PSF file C:\\Users\\User\\AppData\\Local\\Temp\\kernel-cifeljyp.tif\n",
      "Log   \t 704.13 ms \t  244.4Mb  \t Path: C:\\Users\\User\\repos\\flowdec\\python\\examples\\notebooks (writable)\n",
      "Log   \t 704.50 ms \t  244.4Mb  \t Algorithm: Richardson-Lucy\n",
      "Log   \t 841.24 ms \t  152.4Mb  \t Input: 1024x1024x11 \n",
      "Log   \t 942.46 ms \t  199.0Mb  \t PSF: 1024x1024x11  normalized 1.0\n",
      "Log   \t 943.09 ms \t  199.0Mb  \t RL is starting (25 iterations)\n",
      "Log   \t 1800.64 ms \t  194.1Mb  \t JCuFFT initialized for [1024x1024x11]\n",
      "Log   \t 1819.38 ms \t  207.4Mb  \t RL data ready\n",
      "Log   \t 1819.70 ms \t  207.4Mb  \t RL(25.0000)\n",
      "Log   \t 2871.88 ms \t  494.8Mb  \t @1 Time:   1.7 s\n",
      "Log   \t 4.41 s \t  679.8Mb  \t @2 Time:   3.3 s\n",
      "Log   \t 6.03 s \t 1206.4Mb  \t @3 Time:   4.9 s\n",
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      "Log   \t 8.78 s \t 1455.7Mb  \t @5 Time:   7.6 s\n",
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      "Log   \t 11.81 s \t 1578.1Mb  \t @7 Time:  10.7 s\n",
      "Log   \t 13.23 s \t 2106.1Mb  \t @8 Time:  12.1 s\n",
      "Log   \t 14.68 s \t  960.5Mb  \t @9 Time:  13.5 s\n",
      "Log   \t 16.23 s \t 1494.7Mb  \t @10 Time:  15.1 s\n",
      "Log   \t 17.71 s \t 2022.7Mb  \t @11 Time:  16.6 s\n",
      "Log   \t 19.36 s \t  994.5Mb  \t @12 Time:  18.2 s\n",
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      "Log   \t 22.02 s \t 2017.5Mb  \t @14 Time:  20.9 s\n",
      "Log   \t 23.39 s \t 2554.0Mb  \t @15 Time:  22.2 s\n",
      "Log   \t 24.83 s \t 3082.0Mb  \t @16 Time:  23.7 s\n",
      "Log   \t 26.33 s \t 3610.0Mb  \t @17 Time:  25.2 s\n",
      "Log   \t 27.73 s \t 1043.1Mb  \t @18 Time:  26.6 s\n",
      "Log   \t 29.00 s \t 1572.1Mb  \t @19 Time:  27.9 s\n",
      "Log   \t 30.29 s \t 2100.1Mb  \t @20 Time:  29.1 s\n",
      "Log   \t 31.63 s \t 2628.1Mb  \t @21 Time:  30.5 s\n",
      "Log   \t 33.13 s \t 3156.1Mb  \t @22 Time:  32.0 s\n",
      "Log   \t 34.41 s \t 3684.1Mb  \t @23 Time:  33.3 s\n",
      "Log   \t 35.84 s \t 1308.0Mb  \t @24 Time:  34.7 s\n",
      "Log   \t 37.23 s \t 1836.9Mb  \t @25 Time:  36.1 s\n",
      "Log   \t 37.29 s \t 1836.9Mb  \t Stopped>> by iteration 25 > 25\n",
      "Log   \t 37.40 s \t 1886.7Mb  \t Time:  36.3 s Peak:3.6 Gb\n",
      "Log   \t 37.40 s \t 1886.7Mb  \t Richardson-Lucy is finished\n",
      "Log   \t 37.40 s \t 1886.7Mb  \t Show Real Signal Final Display of RL\n",
      "Log   \t 37.47 s \t 1935.0Mb  \t End of RL in  36.3 s and 3.6 Gb\n",
      "End\n",
      "Starting run\n",
      "Log   \t 1745.68 us \t   30.7Mb  \t AcademicFFT Added\n",
      "JTransformsLibrary\n",
      "Log   \t 29.71 ms \t   36.1Mb  \t JTransforms Added\n",
      "Log   \t 31.86 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\repos\\misc\\DeconvolutionLab2\\target\\FFTW\\\n",
      "Log   \t 32.20 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\repos\\misc\\DeconvolutionLab2\\target\\\n",
      "Log   \t 32.47 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\FFTW\\\n",
      "Log   \t 32.80 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\\n",
      "Log   \t 33.01 ms \t   36.1Mb  \t FFTW not found\n",
      "JCuFFTLibrary\n",
      "Log   \t 1043.69 ms \t   36.1Mb  \t JCuFFT Added\n",
      "Log   \t 591.13 ms \t  154.9Mb  \t Load C:\\Users\\User\\AppData\\Local\\Temp\\data-beuslrkm.tif\n",
      "Log   \t 592.26 ms \t  154.9Mb  \t Open image file C:\\Users\\User\\AppData\\Local\\Temp\\data-beuslrkm.tif\n",
      "Log   \t 593.00 ms \t  154.9Mb  \t Image: 1024x1024x11 \n",
      "Log   \t 725.78 ms \t  244.4Mb  \t Load C:\\Users\\User\\AppData\\Local\\Temp\\kernel-cifeljyp.tif\n",
      "Log   \t 726.24 ms \t  244.4Mb  \t Open PSF file C:\\Users\\User\\AppData\\Local\\Temp\\kernel-cifeljyp.tif\n",
      "Log   \t 727.48 ms \t  244.4Mb  \t Path: C:\\Users\\User\\repos\\flowdec\\python\\examples\\notebooks (writable)\n",
      "Log   \t 728.05 ms \t  244.4Mb  \t Algorithm: Richardson-Lucy\n",
      "Log   \t 871.19 ms \t  152.5Mb  \t Input: 1024x1024x11 \n",
      "Log   \t 1009.92 ms \t  201.7Mb  \t PSF: 1024x1024x11  normalized 1.0\n",
      "Log   \t 1010.56 ms \t  201.7Mb  \t RL is starting (25 iterations)\n",
      "Log   \t 1878.22 ms \t  194.0Mb  \t JCuFFT initialized for [1024x1024x11]\n",
      "Log   \t 1879.91 ms \t  197.3Mb  \t RL data ready\n",
      "Log   \t 1880.20 ms \t  197.3Mb  \t RL(25.0000)\n",
      "Log   \t 2419.56 ms \t  689.5Mb  \t @1 Time:   1.2 s\n",
      "Log   \t 4.43 s \t  679.7Mb  \t @2 Time:   3.2 s\n",
      "Log   \t 5.91 s \t 1203.7Mb  \t @3 Time:   4.7 s\n",
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      "Log   \t 8.78 s \t 1455.1Mb  \t @5 Time:   7.6 s\n",
      "Log   \t 10.14 s \t 1031.7Mb  \t @6 Time:   8.9 s\n",
      "Log   \t 11.74 s \t 1562.8Mb  \t @7 Time:  10.5 s\n",
      "Log   \t 13.23 s \t 2090.8Mb  \t @8 Time:  12.0 s\n",
      "Log   \t 14.67 s \t  944.0Mb  \t @9 Time:  13.5 s\n",
      "Log   \t 16.07 s \t 1474.1Mb  \t @10 Time:  14.9 s\n",
      "Log   \t 17.42 s \t 2009.4Mb  \t @11 Time:  16.2 s\n",
      "Log   \t 18.94 s \t  970.1Mb  \t @12 Time:  17.7 s\n",
      "Log   \t 20.35 s \t 1476.9Mb  \t @13 Time:  19.2 s\n",
      "Log   \t 21.67 s \t 2013.8Mb  \t @14 Time:  20.5 s\n",
      "Log   \t 23.17 s \t 2539.3Mb  \t @15 Time:  22.0 s\n",
      "Log   \t 24.60 s \t 3075.6Mb  \t @16 Time:  23.4 s\n",
      "Log   \t 26.12 s \t 3604.6Mb  \t @17 Time:  24.9 s\n",
      "Log   \t 27.62 s \t 1137.6Mb  \t @18 Time:  26.4 s\n",
      "Log   \t 29.04 s \t 1667.1Mb  \t @19 Time:  27.8 s\n",
      "Log   \t 30.45 s \t 2195.1Mb  \t @20 Time:  29.3 s\n",
      "Log   \t 31.77 s \t 2723.1Mb  \t @21 Time:  30.6 s\n",
      "Log   \t 33.11 s \t 3251.1Mb  \t @22 Time:  31.9 s\n",
      "Log   \t 34.62 s \t 3779.1Mb  \t @23 Time:  33.4 s\n",
      "Log   \t 35.96 s \t 1328.1Mb  \t @24 Time:  34.8 s\n",
      "Log   \t 37.26 s \t 1863.7Mb  \t @25 Time:  36.1 s\n",
      "Log   \t 37.37 s \t 1863.7Mb  \t Stopped>> by iteration 25 > 25\n",
      "Log   \t 37.46 s \t 1912.7Mb  \t Time:  36.3 s Peak:3.5 Gb\n",
      "Log   \t 37.46 s \t 1912.7Mb  \t Richardson-Lucy is finished\n",
      "Log   \t 37.46 s \t 1912.7Mb  \t Show Real Signal Final Display of RL\n",
      "Log   \t 37.55 s \t 1955.2Mb  \t End of RL in  36.3 s and 3.5 Gb\n",
      "End\n",
      "Starting run\n",
      "Log   \t 1696.92 us \t   30.7Mb  \t AcademicFFT Added\n",
      "JTransformsLibrary\n",
      "Log   \t 29.57 ms \t   36.1Mb  \t JTransforms Added\n",
      "Log   \t 31.57 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\repos\\misc\\DeconvolutionLab2\\target\\FFTW\\\n",
      "Log   \t 31.85 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\repos\\misc\\DeconvolutionLab2\\target\\\n",
      "Log   \t 32.20 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\FFTW\\\n",
      "Log   \t 32.42 ms \t   36.1Mb  \t FFTW Widsom not found in : C:\\Users\\User\\\n",
      "Log   \t 32.60 ms \t   36.1Mb  \t FFTW not found\n",
      "JCuFFTLibrary\n",
      "Log   \t 934.07 ms \t   36.1Mb  \t JCuFFT Added\n",
      "Log   \t 576.15 ms \t  154.9Mb  \t Load C:\\Users\\User\\AppData\\Local\\Temp\\data-beuslrkm.tif\n",
      "Log   \t 577.13 ms \t  154.9Mb  \t Open image file C:\\Users\\User\\AppData\\Local\\Temp\\data-beuslrkm.tif\n",
      "Log   \t 577.54 ms \t  154.9Mb  \t Image: 1024x1024x11 \n",
      "Log   \t 700.87 ms \t  244.4Mb  \t Load C:\\Users\\User\\AppData\\Local\\Temp\\kernel-cifeljyp.tif\n",
      "Log   \t 702.03 ms \t  244.4Mb  \t Open PSF file C:\\Users\\User\\AppData\\Local\\Temp\\kernel-cifeljyp.tif\n",
      "Log   \t 703.21 ms \t  244.4Mb  \t Path: C:\\Users\\User\\repos\\flowdec\\python\\examples\\notebooks (writable)\n",
      "Log   \t 703.73 ms \t  244.4Mb  \t Algorithm: Richardson-Lucy\n",
      "Log   \t 856.22 ms \t  152.4Mb  \t Input: 1024x1024x11 \n",
      "Log   \t 992.99 ms \t  199.0Mb  \t PSF: 1024x1024x11  normalized 1.0\n",
      "Log   \t 993.96 ms \t  199.0Mb  \t RL is starting (25 iterations)\n",
      "Log   \t 1642.63 ms \t  356.6Mb  \t JCuFFT initialized for [1024x1024x11]\n",
      "Log   \t 1643.25 ms \t  356.6Mb  \t RL data ready\n",
      "Log   \t 1644.97 ms \t  356.6Mb  \t RL(25.0000)\n",
      "Log   \t 2402.49 ms \t  683.1Mb  \t @1 Time:   1.2 s\n",
      "Log   \t 4.36 s \t  677.5Mb  \t @2 Time:   3.2 s\n",
      "Log   \t 5.95 s \t 1201.5Mb  \t @3 Time:   4.8 s\n",
      "Log   \t 7.35 s \t  902.9Mb  \t @4 Time:   6.2 s\n",
      "Log   \t 8.70 s \t 1452.6Mb  \t @5 Time:   7.5 s\n",
      "Log   \t 10.13 s \t 1030.1Mb  \t @6 Time:   8.9 s\n",
      "Log   \t 11.56 s \t 1561.2Mb  \t @7 Time:  10.4 s\n",
      "Log   \t 13.16 s \t 2089.2Mb  \t @8 Time:  12.0 s\n",
      "Log   \t 14.63 s \t  943.3Mb  \t @9 Time:  13.5 s\n",
      "Log   \t 15.95 s \t 1473.4Mb  \t @10 Time:  14.8 s\n",
      "Log   \t 17.35 s \t 2012.7Mb  \t @11 Time:  16.2 s\n",
      "Log   \t 18.84 s \t  976.5Mb  \t @12 Time:  17.7 s\n",
      "Log   \t 20.11 s \t 1483.1Mb  \t @13 Time:  18.9 s\n",
      "Log   \t 21.45 s \t 2011.1Mb  \t @14 Time:  20.3 s\n",
      "Log   \t 22.75 s \t 2539.1Mb  \t @15 Time:  21.6 s\n",
      "Log   \t 24.19 s \t 3067.1Mb  \t @16 Time:  23.0 s\n",
      "Log   \t 25.64 s \t 3595.1Mb  \t @17 Time:  24.5 s\n",
      "Log   \t 27.11 s \t 1058.2Mb  \t @18 Time:  25.9 s\n",
      "Log   \t 28.36 s \t 1606.0Mb  \t @19 Time:  27.2 s\n",
      "Log   \t 29.68 s \t 2144.4Mb  \t @20 Time:  28.5 s\n",
      "Log   \t 30.96 s \t 2626.0Mb  \t @21 Time:  29.8 s\n",
      "Log   \t 32.36 s \t 3172.3Mb  \t @22 Time:  31.2 s\n",
      "Log   \t 34.05 s \t  840.3Mb  \t @23 Time:  32.9 s\n",
      "Log   \t 35.30 s \t 1322.7Mb  \t @24 Time:  34.1 s\n",
      "Log   \t 36.63 s \t 1850.7Mb  \t @25 Time:  35.4 s\n",
      "Log   \t 36.69 s \t 1850.7Mb  \t Stopped>> by iteration 25 > 25\n",
      "Log   \t 36.80 s \t 1924.6Mb  \t Time:  35.6 s Peak:3.5 Gb\n",
      "Log   \t 36.80 s \t 1924.6Mb  \t Richardson-Lucy is finished\n",
      "Log   \t 36.80 s \t 1924.6Mb  \t Show Real Signal Final Display of RL\n",
      "Log   \t 36.87 s \t 1984.0Mb  \t End of RL in  35.7 s and 3.5 Gb\n",
      "End\n",
      "Starting run\n",
      "Log   \t 1499.43 us \t   25.6Mb  \t AcademicFFT Added\n",
      "JTransformsLibrary\n",
      "Log   \t 22.93 ms \t   31.0Mb  \t JTransforms Added\n",
      "Log   \t 24.47 ms \t   31.0Mb  \t FFTW Widsom not found in : C:\\Users\\User\\repos\\misc\\DeconvolutionLab2\\target\\FFTW\\\n",
      "Log   \t 24.76 ms \t   31.0Mb  \t FFTW Widsom not found in : C:\\Users\\User\\repos\\misc\\DeconvolutionLab2\\target\\\n",
      "Log   \t 25.04 ms \t   31.0Mb  \t FFTW Widsom not found in : C:\\Users\\User\\FFTW\\\n",
      "Log   \t 25.26 ms \t   31.0Mb  \t FFTW Widsom not found in : C:\\Users\\User\\\n",
      "Log   \t 25.55 ms \t   31.0Mb  \t FFTW not found\n",
      "JCuFFTLibrary\n",
      "Log   \t 907.13 ms \t   31.0Mb  \t JCuFFT Added\n",
      "Log   \t 583.89 ms \t  154.9Mb  \t Load C:\\Users\\User\\AppData\\Local\\Temp\\data-beuslrkm.tif\n",
      "Log   \t 584.43 ms \t  154.9Mb  \t Open image file C:\\Users\\User\\AppData\\Local\\Temp\\data-beuslrkm.tif\n",
      "Log   \t 584.84 ms \t  154.9Mb  \t Image: 1024x1024x11 \n",
      "Log   \t 702.69 ms \t  244.4Mb  \t Load C:\\Users\\User\\AppData\\Local\\Temp\\kernel-cifeljyp.tif\n",
      "Log   \t 703.16 ms \t  244.4Mb  \t Open PSF file C:\\Users\\User\\AppData\\Local\\Temp\\kernel-cifeljyp.tif\n",
      "Log   \t 703.85 ms \t  244.4Mb  \t Path: C:\\Users\\User\\repos\\flowdec\\python\\examples\\notebooks (writable)\n",
      "Log   \t 704.20 ms \t  244.4Mb  \t Algorithm: Richardson-Lucy\n",
      "Log   \t 854.77 ms \t  150.0Mb  \t Input: 1024x1024x11 \n",
      "Log   \t 976.32 ms \t  194.0Mb  \t PSF: 1024x1024x11  normalized 1.0\n",
      "Log   \t 976.99 ms \t  194.0Mb  \t RL is starting (25 iterations)\n",
      "Log   \t 1645.98 ms \t  354.2Mb  \t JCuFFT initialized for [1024x1024x11]\n",
      "Log   \t 1646.63 ms \t  354.2Mb  \t RL data ready\n",
      "Log   \t 1648.62 ms \t  354.2Mb  \t RL(25.0000)\n",
      "Log   \t 2339.62 ms \t  688.2Mb  \t @1 Time:   1.2 s\n",
      "Log   \t 4.40 s \t  677.6Mb  \t @2 Time:   3.3 s\n",
      "Log   \t 5.89 s \t 1205.7Mb  \t @3 Time:   4.7 s\n",
      "Log   \t 7.38 s \t  906.5Mb  \t @4 Time:   6.2 s\n",
      "Log   \t 8.69 s \t 1444.4Mb  \t @5 Time:   7.6 s\n",
      "Log   \t 10.24 s \t 1030.5Mb  \t @6 Time:   9.1 s\n",
      "Log   \t 11.80 s \t 1561.7Mb  \t @7 Time:  10.7 s\n",
      "Log   \t 13.29 s \t 2089.7Mb  \t @8 Time:  12.1 s\n",
      "Log   \t 14.96 s \t  944.0Mb  \t @9 Time:  13.8 s\n",
      "Log   \t 16.43 s \t 1474.1Mb  \t @10 Time:  15.3 s\n",
      "Log   \t 17.85 s \t 2013.7Mb  \t @11 Time:  16.7 s\n",
      "Log   \t 19.36 s \t 2541.7Mb  \t @12 Time:  18.2 s\n",
      "Log   \t 21.01 s \t 1229.7Mb  \t @13 Time:  19.9 s\n",
      "Log   \t 22.58 s \t 1782.3Mb  \t @14 Time:  21.4 s\n",
      "Log   \t 23.87 s \t 2327.5Mb  \t @15 Time:  22.7 s\n",
      "Log   \t 25.43 s \t 2872.2Mb  \t @16 Time:  24.3 s\n",
      "Log   \t 26.89 s \t 3408.9Mb  \t @17 Time:  25.7 s\n",
      "Log   \t 28.64 s \t  970.6Mb  \t @18 Time:  27.5 s\n",
      "Log   \t 29.92 s \t 1468.1Mb  \t @19 Time:  28.8 s\n",
      "Log   \t 31.37 s \t 1996.1Mb  \t @20 Time:  30.2 s\n",
      "Log   \t 32.81 s \t 2524.1Mb  \t @21 Time:  31.7 s\n",
      "Log   \t 34.20 s \t 3052.1Mb  \t @22 Time:  33.1 s\n",
      "Log   \t 35.61 s \t 3580.1Mb  \t @23 Time:  34.5 s\n",
      "Log   \t 37.04 s \t  937.9Mb  \t @24 Time:  35.9 s\n",
      "Log   \t 38.43 s \t 1467.2Mb  \t @25 Time:  37.3 s\n",
      "Log   \t 38.49 s \t 1467.2Mb  \t Stopped>> by iteration 25 > 25\n",
      "Log   \t 38.58 s \t 1543.2Mb  \t Time:  37.4 s Peak:3.6 Gb\n",
      "Log   \t 38.59 s \t 1543.2Mb  \t Richardson-Lucy is finished\n",
      "Log   \t 38.59 s \t 1543.2Mb  \t Show Real Signal Final Display of RL\n",
      "Log   \t 38.65 s \t 1586.0Mb  \t End of RL in  37.5 s and 3.6 Gb\n",
      "End\n"
     ]
    }
   ],
   "source": [
    "summary = benchmark(run_dl2, 10)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 95,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "mean ± std  : 40263.56 ms ± 820.71 ms\n",
      "min - max   : 39318.80 ms - 41679.61 ms\n",
      "n iterations: 10\n"
     ]
    }
   ],
   "source": [
    "print(summary)"
   ]
  }
 ],
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