Merge pull request #147 from hasindu2008/degrade_profiles

promr10dna4kh_lsk112 degrade profile added

Author: hasindu2008

src/degrade.h

@@ -109,6 +109,12 @@
         SAMPLE_FREQUENCY_4KHZ,\
         SAMPLING_RATE_4KHZ,\
         3),\
+    DATASET_PROMETHION("DNA lsk112 4kHz",\
+        SEQUENCING_KIT_LSK112,\
+        DNA_EXPERIMENT_TYPE,\
+        SAMPLE_FREQUENCY_4KHZ,\
+        SAMPLING_RATE_4KHZ,\
+        3),\
 }
 
 struct dataset {

test/data/exp/degrade/promr10dna4khz_lsk112_auto.blow5

@@ -170,6 +170,12 @@ if [ -z "$bigend" ]; then
     $SLOW5TOOLS degrade "$RAW_DIR/minir10dna4khz_lsk112.blow5" -o "$OUT_DIR/minir10dna4khz_lsk112_auto.blow5" || die "$name: slow5tools failed"
     diff "$OUT_DIR/minir10dna4khz_lsk112_auto.blow5" "$EXP_DIR/minir10dna4khz_lsk112_auto.blow5" > /dev/null || die "$name: diff failed"
     info "$name"
+
+    i=$((i + 1))
+    name="testcase $i: promethion lsk112 4khz"
+    $SLOW5TOOLS degrade "$RAW_DIR/promr10dna4khz_lsk112.blow5" -o "$OUT_DIR/promr10dna4khz_lsk112_auto.blow5" || die "$name: slow5tools failed"
+    diff "$OUT_DIR/promr10dna4khz_lsk112_auto.blow5" "$EXP_DIR/promr10dna4khz_lsk112_auto.blow5" > /dev/null || die "$name: diff failed"
+    info "$name"
 fi
 
 exit 0