Prepare 4.1.1 release (#1336)

Author: rly

CHANGELOG.md

@@ -1,11 +1,12 @@
 # HDMF Changelog
 
-## HDMF 4.1.1 (Upcoming)
+## HDMF 4.1.1 (October 22, 2025)
 
 ### Fixed
 - Fixed copying of `TypeMap` and `TypeConfigurator`. Previously, the same global `TypeConfigurator` instance was used in all copies of a `TypeMap`. @rly [#1302](https://github.com/hdmf-dev/hdmf/pull/1302)
 - Fixed `get_data_shape` to use `Data.data.shape` instead of `Data.shape`, which may be overridden by subclasses. @rly [#1311](https://github.com/hdmf-dev/hdmf/pull/1311)
 - Fixed HTML representation of datasets when reading from LINDI. @bendichter [#1335](https://github.com/hdmf-dev/hdmf/pull/1335)
+- Fixed bug where compound datatypes were disregarding custom data I/O options with the zarr backend. @pauladkisson [#1297](https://github.com/hdmf-dev/hdmf/pull/1297)
 
 ### Added
 - Added a check for a compound datatype that is not defined in the schema or spec. This is currently not supported. @mavaylon1 [#1276](https://github.com/hdmf-dev/hdmf/pull/1276)
@@ -18,9 +19,6 @@
 - Deprecated the experimental `HERDManager.link_resources` and `HERDManager.link_external_resources` and added the property `HERDManager.external_resources` to support downstream API function overloading. @mavaylon1, @rly [#1292](https://github.com/hdmf-dev/hdmf/pull/1292)
 
 
-### Fixed
-- Fixed bug where compound datatypes were disregarding custom data I/O options with the zarr backend. @pauladkisson [#1297](https://github.com/hdmf-dev/hdmf/pull/1297)
-
 ## HDMF 4.1.0 (May 28, 2025)
 
 ### Enhancements

src/hdmf/common/table.py

@@ -643,9 +643,9 @@ def __build_columns(columns, df=None):
                 # EnumData is the indexing column, so it should go first
                 if data is not None:
                     elements, data = np.unique(data, return_inverse=True)
-                    tmp.append(EnumData(name, desc, data=data, elements=elements))
+                    tmp.append(EnumData(name=name, description=desc, data=data, elements=elements))
                 else:
-                    tmp.append(EnumData(name, desc, data=data))
+                    tmp.append(EnumData(name=name, description=desc, data=data))
                 # EnumData handles constructing the VectorData object that contains EnumData.elements
                 # --> use this functionality (rather than creating here) for consistency and less code/complexity
                 tmp.append(tmp[-1].elements)

tests/unit/spec_tests/test_spec_write.py

@@ -78,7 +78,7 @@ def _test_namespace_file(self):
     source: mylab.extensions.yaml
     title: Extensions for my lab
   version: 0.0.1
-""" % self.date.isoformat()  # noqa: E122
+""" % self.date.isoformat()
             nsstr = file.read()
             self.assertEqual(nsstr, match_str)
 
@@ -429,7 +429,7 @@ def _test_namespace_file(self):
   schema:
   - source: mylab.extensions.yaml
   version: 0.0.1
-""" % self.date.isoformat()  # noqa: E122
+""" % self.date.isoformat()
             nsstr = file.read()
             self.assertEqual(nsstr, match_str)