RDM_biodata_course/_quarto.yml at webpage · hds-sandbox/RDM_biodata_course · GitHub

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project:
  type: website

website:
  title: "RDM for biodata"
  site-url: 'https://hds-sandbox.github.io/RDM_NGS_course/'
  navbar:
    logo: /img/logo.png
    logo-href: http://hds-sandbox.github.io/
    background: primary
    left:
      - text: "Home"
        file: index.qmd
      - text: "Course material"
        file: develop/01_RDM_intro.qmd
      - text: "Use cases"
        file: use_cases.qmd
      - text: "Practical material"
        file: "develop/practical_workshop.qmd"
      - text: "Cheat Sheet"
        file: "develop/cheatSheet.qmd"
    right:
      - icon: github
        href: https://github.com/hds-sandbox
        aria-label: GitHub
      - icon: linkedin
        href: https://www.linkedin.com/company/ucph-heads/
        aria-label: LinkedIn

  sidebar:
    - title: "Course material"
      style: "docked"
      search: true
      contents:
        - section: "Basics"
          contents:
            - develop/01_RDM_intro.qmd
            - develop/02_DMP.qmd
        - section: "Key practices"
          contents:
            - develop/03_DOD.qmd
            - develop/04_metadata.qmd
            - develop/05_VC.qmd
            - develop/06_pipelines.qmd
            - develop/07_repos.qmd
    - title: "Use cases"
      contents:
        - use_cases.qmd
        - section: "General"
          contents:
            - develop/examples/mkdocs_pages.qmd
        - section: "NGS data"
          contents:
            - develop/examples/NGS_OS_FAIR.qmd
            - develop/examples/NGS_management.qmd
            - develop/examples/NGS_metadata.qmd
        - section: "Proteomics"
          contents:
            - develop/examples/proteomics_metadata.qmd

bibliography: resources/references.bib
copyright: CC-BY-SA 4.0 license
# docs_dir: develop, instead of writing the path in content

format:
  html:
    theme:
      light: [materia, css/materialight.scss]
      dark: darkly
    toc: true
    code-fold: true
filters:
  - css/custom-callout.lua

#    include-in-header:
#      - file: "resources/bioschema.html"