sdrf.standalone.qmd

---
title: How to annotate data in proteomics
summary: A standalone version of the part of the Clinical Proteomics Teaching Module about SDRF metadata standard
date: last-modified
author: Lev Levitsky, Veit Schwämmle
hide:
  - navigation
---

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# Overview

This short training material is focused on proteomics data annotation and SDRF format. It is expected to take 1.5 hours to complete.

#### Learning goals

- Understand the concept, purpose and significance of data annotation in proteomics
- Learn about the scope and structure of SDRF
- Get practical experience with [lesSDRF](https://lessdrf.streamlit.app/), what it can and cannot do.
:::


## Part 1: Understanding study design and experimental setup

{{< include TeachingModule/study_intro.qmd >}}

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We do not include any questions about the study to save time, but please read and understand the article so you know enough about the samples and data collected.
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{{< include TeachingModule/supp_data_questions.qmd >}}

## Part 2: Data annotation with SDRF

{{< include TeachingModule/sdrf.qmd >}}

+---------------+---------------------------------------------------------------------------------------------------+
|Name           | <textarea id="name" placeholder="Type your name here..." class="input-box"></textarea>            |
+---------------+---------------------------------------------------------------------------------------------------+
|Email          | <textarea id="email" placeholder="Type your email here..." class="input-box"></textarea>          |
+---------------+---------------------------------------------------------------------------------------------------+
|Course/Program | <textarea id="course" placeholder="Type your course/program here..." class="input-box"></textarea>|
+---------------+---------------------------------------------------------------------------------------------------+
|Date           | <textarea id="date" placeholder="Type the date here..." class="input-box"></textarea>             |
+---------------+---------------------------------------------------------------------------------------------------+

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