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Description
Dear developer
In the previous bug issue, I solve the bug with your support. Thank you again.
Based on the analysis results of Microexonator, now I'm trying to develop my hypothesis using single-cell RNA seq (scRNA seq) data from the public DB.
Here, I have two questions.
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Does Microexonator only support SMART2-seq or MARS-seq data?
10X data doesn't have *.fastq files for each cell.
So, I guess the data from 10X platform can't generate whippet_delta.yaml, which is needed for scRNA seq analysis. -
Can you share the running time for the analysis of 1657 cells from your published paper?
We have several clusters with different numbers of cores/nodes.
In the analysis of bulk-RNA seq data, we analyzed over 100 samples and it takes a bit of time using 64 cores.
Now, we will analyze over 2000 cells and fastq files.
So, if we know the running time for your previous analysis on that scale,
it would be helpful to determine which cluster we will use.
I would glad to hear from you.
Thank you.
Regards,
Hanna