Error in job Output #45
Description
Hi! When I was running MicroExonator, at later process I got errors as follows:
============================================
$ ~/anaconda3/envs/snakemake_env/bin/snakemake -s MicroExonator.smk --use-conda -k -j 10 --rerun-incomplete
Provided cores: 10
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 Output
1 high_confident_filters
1 quant
3
rule Output:
input: Round2/TOTAL.ME_centric.txt, Round2/TOTAL.sample_cov_filter.txt, Round2/TOTAL.ME_centric.ME_matches.txt
output: Report/out_filtered_ME.txt, Report/out_low_scored_ME.txt, Report/out_shorter_than_3_ME.txt
log: logs/Output.log
jobid: 4
Error in job Output while creating output files Report/out_filtered_ME.txt, Report/out_low_scored_ME.txt, Report/out_shorter_than_3_ME.txt.
RuleException:
CalledProcessError in line 159 of /lustre7/home/tsuna8984/MicroExonator/rules/Round2_post_processing.smk:
Command 'Rscript /lustre7/home/tsuna8984/MicroExonator/src/.snakemake.7ax85rg2.final_filters3.R' returned non-zero exit status 1.
File "/lustre7/home/tsuna8984/MicroExonator/rules/Round2_post_processing.smk", line 159, in __rule_Output
File "/home/tsuna8984/anaconda3/envs/snakemake_env/lib/python3.6/concurrent/futures/thread.py", line 56, in run
Job failed, going on with independent jobs.
Exiting because a job execution failed. Look above for error message
I confirmed that input files actually exist in Round2 directory. I did not make any modifications in the scripts of final_filters3.R. Could you give me any idea to solve this?
Thank you.