VASAseq_2022/II_Alternative_splicing/a_Transcriptome_assembly/Build/cluster.json at main · hemberg-lab/VASAseq_2022 · GitHub

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{
    "__default__" :
    {
        "queue"     : "normal",
        "nCPUs"     : "1",
        "memory"    : 10000,
        "resources" : "\"select[mem>10000] rusage[mem=10000] span[hosts=1]\"",
        "name"      : "JOBNAME.{rule}.{wildcards}",
        "output"    : "logs/{rule}.{wildcards}.out",
        "error"     : "logs/{rule}.{wildcards}.err",
        "Group"     : "team_hemberg",
        "tCPU"      : "99999"
    },

    "hisat2_Genome_index" :
    {
        "queue"     : "normal",
        "nCPUs"     : 16,
        "memory"    : 240000,
        "resources" : "\"select[mem>240000] rusage[mem=240000] span[hosts=1]\"",
    },


    "deduplicate" :
    {
        "memory"    : 40000,
        "queue" : long,
        "resources" : "\"select[mem>40000] rusage[mem=40000] span[hosts=1]\"",
    },


    "hisat2_to_Genome" :
    {
        "nCPUs"     : 3
    }


}