Set up error

[anilkanthi]

Hi,

I am trying to set up the tool for HiGlass analysis, but it gives an error when the command is run:

module load python/cpu/2.7.15
clodius

Traceback (most recent call last):
File "/gpfs/share/apps/python/cpu/2.7.15-ES/bin/clodius", line 5, in
from clodius.cli.aggregate import cli
File "/gpfs/share/apps/python/cpu/2.7.15-ES/lib/python2.7/site-packages/clodius/cli/init.py", line 18, in
from . import ( # noqa: F401
File "/gpfs/share/apps/python/cpu/2.7.15-ES/lib/python2.7/site-packages/clodius/cli/aggregate.py", line 539
f"Unable to find {line_parts[0]} in the list of chromosome sizes. "
^
SyntaxError: invalid syntax

[nvictus]

Looks like you are using Python 2.7. Clodius requires Python 3.

[anilkanthi]

Great will try that out. Thanks!