mkdocs.yml

site_name: DC1 Visualization
theme:
  name: material

nav:
  - Introduction: 'index.md'
  - Getting Started: 'general/getting-started.md'
  - Source:
      - model (data):
        - data loading (.mat files): 'model/data_loading_mat.md'
        - data loading (.npz files): 'model/data_loading_npz.md'
        - data structs: 'model/DC1DataContainer.md'
        - filters: 'model/filters.md'
        - raw data helpers: 'model/raw_data_helpers.md'
        - spike detection: 'model/spike_detection.md'
        - statistics: 'model/statistics.md'
      - view (gui elements):
        - themes: 'view/gui_themes.md'
        - layouts: 'view/layouts.md'
      - controller:
          - modes:
              - initialize charts: 'controller/modes/init_charts.md'
              - compression: 'controller/modes/mode_compression.md'
              - diagnostic: 'controller/modes/mode_diagnostic.md'
              - noise: 'controller/modes/mode_noise.md'
              - spike finding (main): 'controller/modes/mode_spikefinding.md'
              - trace search: 'controller/modes/mode_tracesearch.md'
          - plots:
              - array map: 'controller/plots/array_map.md'
              - channel trace: 'controller/plots/channel_trace.md'
              - mini map: 'controller/plots/mini_map.md'
              - noise heatmap: 'controller/plots/noise_heatmap.md'
              - noise histogram: 'controller/plots/noise_histogram.md'
              - spike rate: 'controller/plots/spike_rate.md'
          - windows:
              - electrode list: 'controller/windows/window_electrodelist.md'
              - individual channel analysis: 'controller/windows/window_individualchannel.md'
              - profiler: 'controller/windows/window_profiler.md'
              - session parameters: 'controller/windows/window_sessionparameters.md'
              - session startup: 'controller/windows/window_sessionstartup.md'
plugins:
  - search
  - mkdocstrings:
      handlers:
             python:
                setup_commands:
                  - import sys
                  - sys.path.append("app")