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@@ -91,6 +91,8 @@ Separate the peptide sequence and RT (in second) by tab (\t), encode the modifie
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'Y[80]' -> '4'
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```
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You may use Excel (search and replace than export) to prepare your data.
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<h3id="3.2">3.2 Model parameters</h3>
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There are only several parameters to specify in config.py, e.g. for HeLa data, which is self-explainable:
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- provided the same LC type, the species, gradient, and modification status can all be different.
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- do not change max length or amino acid alphabet here or you need to pre-train the model again.
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- you have to use the GPU version to load the pre-trained models in param/. If you are using the CPU version, load model from param_cpu instead.
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- the pretrained models for all the datasets used in the paper (including RPLC, SCX, and HILIC) are provided. See [Release page](https://github.com/horsepurve/DeepRTplus/releases) for details.
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To reproduce the transfer learning result in the paper, just type:
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