repos.txt

https://github.com/lucydot/effmass
https://github.com/datalad/datalad
https://github.com/Ciela-Institute/caustics
https://github.com/lanl/PyBNF
https://github.com/JulianKarlBauer/mechkit
https://github.com/clawpack/pyclaw
https://github.com/Qiskit/qiskit-experiments
https://github.com/parmoo/parmoo
https://github.com/cmelab/flowerMD
https://github.com/mortonne/psifr
https://github.com/mosdef-hub/mbuild
https://github.com/healpy/healpy
https://github.com/JPenuchot/ctbench
https://github.com/jonschwenk/RivGraph
https://github.com/MrMinimal64/multivar_horner
https://github.com/hpc-social/surveys
https://github.com/fitbenchmarking/fitbenchmarking
https://github.com/buildtesters/buildtest
https://github.com/thomaspinder/GPJax
https://github.com/spack/spack
https://github.com/dr-joe-wirth/primerForge
https://github.com/cholla-hydro/cholla
https://github.com/AstarVienna/irdb
https://github.com/snowformatics/macrobot
https://github.com/syasini/AstroPaint
https://github.com/NLeSC/litstudy
https://github.com/adbar/htmldate
https://github.com/CAMI-challenge/CAMITAX
https://github.com/su2code/SU2
https://github.com/biopython/biopython
https://github.com/NathanSandford/Chem-I-Calc
https://github.com/JuliaDynamics/TimeseriesSurrogates.jl
https://github.com/colour-science/colour
https://github.com/deepskies/DeepBench
https://github.com/Autostronomy/AstroPhot
https://github.com/optuna/optuna
https://github.com/MESAHub/mesa
https://github.com/pmeier/pystiche
https://github.com/sunpy/sunpy
https://github.com/williamjameshandley/anesthetic
https://github.com/samirmartins/pydaq
https://github.com/netsiphd/netrd
https://github.com/cosmo-epfl/chemiscope
https://github.com/KingsburyLab/pyEQL
https://github.com/mosdef-hub/foyer
https://github.com/PennyLaneAI/catalyst
https://github.com/plotly/dash
https://github.com/ropenscilabs/qcoder
https://github.com/maps-as-data/MapReader
https://github.com/streamlit/streamlit
https://github.com/scikit-learn/scikit-learn
https://github.com/dnarayanan/powderday
https://github.com/mlpack/mlpack
https://github.com/nu-radio/NuRadioMC
https://github.com/DataBiosphere/toil
https://github.com/nci/scores
https://github.com/einsteinpy/einsteinpy
https://github.com/robbievanleeuwen/section-properties
https://github.com/pandas-dev/pandas
https://github.com/BiomedSciAI/fuse-med-ml
https://github.com/jmejia8/Metaheuristics.jl
https://github.com/jepegit/cellpy
https://github.com/sourmash-bio/sourmash
https://github.com/bcgsc/btllib
https://github.com/glotzerlab/hoomd-blue
https://github.com/trixi-framework/TrixiParticles.jl
https://github.com/renecotyfanboy/jaxspec
https://github.com/nanoporetech/megalodon
https://github.com/pysal/spaghetti
https://github.com/mdtanker/polartoolkit
https://github.com/hoechenberger/questplus
https://github.com/ianfhunter/GNOLL
https://github.com/gavinsimpson/gratia
https://github.com/sbi-dev/sbi
https://github.com/skypyproject/skypy
https://github.com/ynop/audiomate
https://github.com/21cmfast/21cmFAST
https://github.com/WilliamLwj/PyXAB
https://github.com/JuliaSmoothOptimizers/PDENLPModels.jl
https://github.com/scikit-hep/iminuit
https://github.com/SMI/SmiServices
https://github.com/PrincetonUniversity/athena
https://github.com/KarrLab/de_sim
https://github.com/pyomeca/biorbd
https://github.com/nansencenter/DAPPER
https://github.com/TeamCOMPAS/COMPAS
https://github.com/pmkruyen/dearscholar
https://github.com/DeepRank/deeprank
https://github.com/SchlossLab/mikropml
https://github.com/extendr/extendr
https://github.com/jupyterlab/jupyterlab
https://github.com/scverse/anndata
https://github.com/IMMM-SFA/mosartwmpy
https://github.com/ropensci/stats19
https://github.com/stan-dev/stan
https://github.com/ropensci/tidyqpcr
https://github.com/ropensci/osmextract
https://github.com/marinebon/obisindicators
https://github.com/pyro-ppl/pyro
https://github.com/undark-lab/swyft
https://github.com/Martinsos/edlib
https://github.com/ekaterinailin/AltaiPony
https://github.com/mirapy-org/mirapy
https://github.com/Materials-Consortia/optimade-python-tools
https://github.com/radis/radis
https://github.com/uclchem/SpectralRadex
https://github.com/TrackerControl/tracker-control-android
https://github.com/xgi-org/xgi
https://github.com/parafields/parafields
https://github.com/gvilitechltd/LibSWIFFT
https://github.com/llrs/experDesign
https://github.com/jupyter/notebook
https://github.com/MLMI2-CSSI/foundry
https://github.com/openmopac/mopac
https://github.com/stillwater-sc/universal
https://github.com/3fon3fonov/exostriker
https://github.com/precice/aste
https://github.com/hpc-social/map
https://github.com/NicolasHug/Surprise
https://github.com/thorstone25/qups
https://github.com/astropy/astropy
https://github.com/mad-lab-fau/tpcp
https://github.com/ropenscilabs/gendercoder
https://github.com/gridap/Gridap.jl
https://github.com/open2c/polychrom
https://github.com/arjunsavel/SImMER
https://github.com/UU-ER/AdOpT-NET0
https://github.com/automl/amltk
https://github.com/finsberg/gotranx
https://github.com/JuliaLang/julia
https://github.com/sxs-collaboration/spectre
https://github.com/BayraktarLab/cell2location
https://github.com/ropensci/dataspice
https://github.com/CouncilDataProject/speakerbox
https://github.com/nuclear-multimessenger-astronomy/nmma
https://github.com/Jashcraf/poke
https://github.com/palaimon/ipyannotator
https://github.com/cgre-aachen/gemgis
https://github.com/cogent3/cogent3
https://github.com/blackjax-devs/blackjax
https://github.com/JuliaDynamics/DrWatson.jl
https://github.com/HofstadterTools/HofstadterTools
https://github.com/AstarVienna/ScopeSim_Templates
https://github.com/sjvrijn/mf2
https://github.com/scverse/scvi-tools
https://github.com/smith-chem-wisc/MetaMorpheus
https://github.com/GeminiDRSoftware/DRAGONS
https://github.com/JuliaPlots/Makie.jl
https://github.com/multiscale/muscle3
https://github.com/dsavransky/EXOSIMS
https://github.com/lanl/spiner
https://github.com/Qepanna/goFlux
https://github.com/fury-gl/fury
https://github.com/ECSHackWeek/impedance.py
https://github.com/ElectionDataAnalysis/electiondata
https://github.com/hpc-maths/samurai
https://github.com/feature-engine/feature_engine
https://github.com/SatelliteShorelines/CoastSeg
https://github.com/hpc-social/jobs
https://github.com/jameschapman19/cca_zoo
https://github.com/euroargodev/argopy
https://github.com/aqlaboratory/openfold
https://github.com/lmcinnes/umap
https://github.com/rdicosmo/parmap
https://github.com/ropensci/lightr
https://github.com/furrer-lab/abn
https://github.com/joglekara/VlaPy
https://github.com/lcpp-org/RustBCA
https://github.com/firefly-cpp/NiaARM
https://github.com/geopandas/geopandas
https://github.com/scikit-hep/pyhf
https://github.com/panoptes/POCS
https://github.com/scipy/scipy
https://github.com/scverse/muon
https://github.com/vatlab/sos-notebook
https://github.com/lanl/singularity-eos
https://github.com/N-Wouda/ALNS
https://github.com/glotzerlab/coxeter
https://github.com/firedrakeproject/firedrake
https://github.com/Robaina/Pynteny
https://github.com/RaRe-Technologies/gensim
https://github.com/statdivlab/rigr
https://github.com/cupy/cupy
https://github.com/DataverseLabs/pyinterpolate
https://github.com/AngryMaciek/hypercomplex
https://github.com/lzkelley/kalepy
https://github.com/InsightSoftwareConsortium/ITK
https://github.com/precice/micro-manager
https://github.com/vprusso/toqito
https://github.com/siavash-saki/tesspy
https://github.com/DLR-AMR/t8code
https://github.com/gnudatalanguage/gdl
https://github.com/DavidLapous/multipers
https://github.com/arup-group/pam
https://github.com/ReSurfEMG/ReSurfEMG
https://github.com/qutip/qutip
https://github.com/JuliaManifolds/Manopt.jl
https://github.com/traja-team/traja
https://github.com/networkx/networkx
https://github.com/LiberTEM/LiberTEM
https://github.com/MintonGroup/swiftest
https://github.com/pvlib/pvlib-python
https://github.com/frank1010111/pywaterflood
https://github.com/opencobra/cobrapy
https://github.com/SISPO-developers/sispo
https://github.com/reizio/reiz.io
https://github.com/atomec-project/atoMEC
https://github.com/pymedphys/pymedphys
https://github.com/mathLab/PINA
https://github.com/JacobBumgarner/VesselVio
https://github.com/numba/numba
https://github.com/catboost/catboost
https://github.com/lumen-org/lumen
https://github.com/aiidateam/aiida-core
https://github.com/AMReX-Astro/Castro
https://github.com/sanctuuary/APE
https://github.com/xoopR/set6
https://github.com/heracles-ec/heracles
https://github.com/ropensci/webchem
https://github.com/Merck/BioPhi
https://github.com/ropensci/BaseSet
https://github.com/PyTorchLightning/metrics
https://github.com/pysat/pysat
https://github.com/hpc-social/events
https://github.com/Pometry/Raphtory
https://github.com/ivadomed/ivadomed
https://github.com/Qiskit/rustworkx
https://github.com/bokeh/bokeh
https://github.com/DeltaRCM/pyDeltaRCM
https://github.com/CIRADA-Tools/RM-Tools
https://github.com/PetroFit/petrofit
https://github.com/symmy596/SurfinPy
https://github.com/andyphilips/dynamac
https://github.com/miRTop/mirtop
https://github.com/duetosymmetry/qnm
https://github.com/SciML/DataInterpolations.jl
https://github.com/ropensci/rinat
https://github.com/CQCL/qujax
https://github.com/simd-everywhere/simde
https://github.com/pytorch/vision
https://github.com/ml-evs/matador
https://github.com/ipython/ipython
https://github.com/kazewong/flowMC
https://github.com/ECP-WarpX/WarpX
https://github.com/HDFGroup/hdf5
https://github.com/liulab-dfci/TRUST4
https://github.com/IAMconsortium/pyam
https://github.com/tbrown122387/pf
https://github.com/tardis-sn/carsus
https://github.com/sblunt/orbitize
https://github.com/Cambridge-ICCS/FTorch
https://github.com/jorgensd/adios4dolfinx
https://github.com/AutoResearch/sweetbean
https://github.com/jacksund/simmate
https://github.com/cea-hpc/modules
https://github.com/tjiangHIT/cuteSV
https://github.com/nextstrain/auspice
https://github.com/icesat2py/icepyx
https://github.com/tensorflow/tensorflow
https://github.com/JuliaHEP/UnROOT.jl
https://github.com/fAndreuzzi/BisPy
https://github.com/snad-space/ztf-viewer
https://github.com/UNSW-CEEM/NEMSEER
https://github.com/cython/cython
https://github.com/aadya940/chainopy
https://github.com/chocoteam/choco-solver
https://github.com/simonsobs/pixell
https://github.com/open2c/cooler
https://github.com/google/jax
https://github.com/econ-ark/HARK
https://github.com/flyaflya/causact
https://github.com/kanaverse/kana
https://github.com/conda-forge/conda-smithy
https://github.com/TeaspoonTDA/teaspoon
https://github.com/parthenon-hpc-lab/parthenon
https://github.com/Jammy2211/PyAutoLens
https://github.com/Cascella-Group-UiO/HyMD
https://github.com/jump-dev/JuMP.jl
https://github.com/delve-team/delve
https://github.com/quantling/pyndl
https://github.com/roualdes/bridgestan
https://github.com/kblin/ncbi-acc-download
https://github.com/CLARIAH/grlc
https://github.com/SDXorg/pysd
https://github.com/SietzeN/glottospace
https://github.com/MolMeDB/MolMeDB
https://github.com/qpv-research-group/solcore5
https://github.com/NIFTy-PPL/NIFTy
https://github.com/jobovy/galpy
https://github.com/cvs-health/langfair
https://github.com/BradyAJohnston/MolecularNodes
https://github.com/NeuralEnsemble/PyNN
https://github.com/ropensci/rdhs
https://github.com/smithlabcode/falco
https://github.com/ConnorStoneAstro/AutoProf
https://github.com/jgieseler/solarmach
https://github.com/dask/dask
https://github.com/dpalmasan/TRUNAJOD2.0
https://github.com/glotzerlab/freud
https://github.com/dfki-ric/movement_primitives
https://github.com/vaexio/vaex
https://github.com/matplotlib/matplotlib
https://github.com/freqtrade/freqtrade
https://github.com/ropensci/jstor
https://github.com/LondonBiofoundry/basicsynbio
https://github.com/scverse/scanpy
https://github.com/zdelrosario/py_grama
https://github.com/tumcms/Open-Infra-Platform
https://github.com/riogroup/SORA
https://github.com/bluesky/bluesky
https://github.com/dicompyler/dicompyler-core
https://github.com/privong/pymccorrelation
https://github.com/jonescompneurolab/hnn-core
https://github.com/DLTK/DLTK
https://github.com/CLIMADA-project/climada_python
https://github.com/ranocha/SummationByPartsOperators.jl
https://github.com/shankarpandala/lazypredict
https://github.com/TORCH-Consortium/MAGMA
https://github.com/mackelab/sbi
https://github.com/biaslab/RxInfer.jl
https://github.com/lazear/sage
https://github.com/graphnet-team/graphnet
https://github.com/NathanSkene/EWCE
https://github.com/VirtualPlanetaryLaboratory/vplanet
https://github.com/jbytecode/LinRegOutliers
https://github.com/statsmodels/statsmodels
https://github.com/DavidT3/XGA
https://github.com/nextstrain/nextclade
https://github.com/DeepRank/deeprank-core
https://github.com/containers/podman
https://github.com/tardis-sn/tardis
https://github.com/nextstrain/augur
https://github.com/mzy2240/ESA
https://github.com/snek5000/snek5000
https://github.com/idaholab/moose
https://github.com/lrnv/Copulas.jl
https://github.com/StingraySoftware/stingray
https://github.com/SCIInstitute/UncertainSCI