fix: use extended regular expressions for sed extraction

Author: dlaehnemann

workflow/rules/phylogeny.smk

@@ -366,7 +366,7 @@ rule extract_ml_tree_likelihoods:
         "../envs/grep.yaml"
     shell:
         'grep "ML tree search #" {input.log} | '
-        "sed -e 's/^.*ML tree search #\([0-9]\+\), logLikelihood: \(-[0-9]\+\.[0-9]\+\)/\1\t\2/' | "
+        r"sed -r -e 's/^.*ML tree search #([0-9]+), logLikelihood: (-[0-9]+.[0-9]+)$/\1\t\2/' | "
         "sort -n -k 1,1 "
         ">control.GTHKY4+G+FO.max_4_missing.search.raxml.mlTrees.likelihoods.tsv "
         "2>{log}"