pre-alignment-qc/example-params.json at main · icgc-argo-workflows/pre-alignment-qc · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
{
  "study_id": "TEST-QA",
  "analysis_id": "06696e4a-71bf-41d9-a96e-4a71bf41d9dd",
  "song_url": "https://song.rdpc-qa.cancercollaboratory.org",
  "score_url": "https://score.rdpc-qa.cancercollaboratory.org",
  "cpus": 1,
  "mem": 1,
  "tempdir": "/tmp",
  "download": {
    "song_url": "https://submission-song.rdpc-qa.cancercollaboratory.org",
    "song_cpus": 2,
    "song_mem": 2,
    "score_url": "https://submission-score.rdpc-qa.cancercollaboratory.org",
    "score_cpus": 3,
    "score_mem": 8
  },
  "seqDataToLane": {
    "cpus": 2,
    "mem": 2
  },
  "fastqc": {
    "cpus": 2,
    "mem": 2
  },
  "cutadapt": {
    "cpus": 2,
    "mem": 2
  },
  "multiqc": {
    "cpus": 2,
    "mem": 2
  },
  "payloadGen": {
    "cpus": 2,
    "mem": 2
  },
  "uploadQc": {
    "song_cpus": 1,
    "song_mem": 1,
    "score_cpus": 1,
    "score_mem": 1
  }
}