Robot Updated at:17 Mar 2024 21:10:04 GMT

Author: yiliuyan161

docs/awesome/awesome-agi-cocosci.md

@@ -654,7 +654,7 @@ organized into intricate patterns that seem to be consistent across individuals.
 
 #### Design Practises
 
-* [No Grammar to Rule Them All: A Survey of JSON-style DSLs for Visualization](https://scholar.google.com/scholar?cluster=17206818917381447796&hl=en&as_sdt=0,5) - ***IEEE Transactions on Visualization and Computer Graphics***, 2022. [[All Versions](https://scholar.google.com/scholar?cluster=17206818917381447796&hl=en&as_sdt=0,5)]. A survey on the design and implementation of 57 JSON-style DSLs for a variety of visualization and visual interaction tasks, suggesting that no one DSL will be able to capture all of them without compromising essential parts of its domain design.
+* [No Grammar to Rule Them All: A Survey of JSON-style DSLs for Visualization](https://ieeexplore.ieee.org/abstract/document/9904438) - ***IEEE Transactions on Visualization and Computer Graphics***, 2022. [[All Versions](https://scholar.google.com/scholar?cluster=17206818917381447796)]. A survey on the design and implementation of 57 JSON-style DSLs for a variety of visualization and visual interaction tasks, suggesting that no one DSL will be able to capture all of them without compromising essential parts of its domain design.
 
 * [Quantifying usability of domain-specific languages: An empirical study on software maintenance](https://www.sciencedirect.com/science/article/pii/S0164121214002799) - ***Journal of Systems and Software***, 2015. [[All Versions](https://scholar.google.com/scholar?cluster=3450893039446010260&hl=en&as_sdt=0,5)]. A study to compare the usability of textual DSLs under the perspective of software maintenance, suggesting that the proposed metrics were useful: (1) to early identify DSL usability limitations, (2) to reveal specific DSL features favoring maintenance tasks, and (3) to successfully analyze eight critical DSL usability dimensions.
 

docs/awesome/awesome-biological-image-analysis.md

@@ -15,6 +15,7 @@ Biological image analysis aims to increase our understanding of biology through
 
 ## General image analysis software
 - [3D Slicer](https://github.com/Slicer/Slicer) - Free, open source and multi-platform software package widely used for medical, biomedical, and related imaging research.
+- [BiaPy](https://biapyx.github.io/) - Open source ready-to-use all-in-one library that provides deep-learning workflows for a large variety of bioimage analysis tasks.
 - [BioImageXD](https://bioimagexd.net) - Free, open source software package for analyzing, processing and visualizing multi-dimensional microscopy images.
 - [Cell-ACDC](https://github.com/SchmollerLab/Cell_ACDC) - A GUI-based Python framework for segmentation, tracking, cell cycle annotations and quantification of microscopy data.
 - [CellProfiler](https://github.com/CellProfiler/CellProfiler) - Open-source software helping biologists turn images into cell measurements.
@@ -43,6 +44,7 @@ Biological image analysis aims to increase our understanding of biology through
 - [EBImage](https://github.com/aoles/EBImage) - Image processing toolbox for R.
 - [GPim](https://github.com/ziatdinovmax/GPim) - Gaussian processes and Bayesian optimization for images and hyperspectral data.
 - [MAPS](https://github.com/mahmoodlab/MAPS) - MAPS (Machine learning for Analysis of Proteomics in Spatial biology) is a machine learning approach facilitating rapid and precise cell type identification with human-level accuracy from spatial proteomics data.
+- [MicroSAM](https://github.com/computational-cell-analytics/micro-sam) - Tools for segmentation and tracking in microscopy build on top of SegmentAnything. Segment and track objects in microscopy images interactively.
 - [MorpholibJ](https://github.com/ijpb/MorphoLibJ) - Collection of mathematical morphology methods and plugins for ImageJ.
 - [PartSeg](https://github.com/4DNucleome/PartSeg) - A GUI and a library for segmentation algorithms.
 - [PyImSegm](https://github.com/Borda/pyImSegm) - Image segmentation - general superpixel segmentation and center detection and region growing.
@@ -98,6 +100,7 @@ Biological image analysis aims to increase our understanding of biology through
 - [Big-fish](https://github.com/fish-quant/big-fish) - Python package for the analysis of smFISH images.
 - [DypFISH](https://github.com/cbib/dypfish) - Python library for spatial analysis of smFISH images.
 - [RS-FISH](https://github.com/PreibischLab/RS-FISH) - Fiji plugin to detect FISH spots in 2D/3D images which scales to very large images.
+- [Spotiflow](https://github.com/weigertlab/spotiflow) -  A deep learning-based, threshold-agnostic, and subpixel-accurate spot detection method developed for spatial transcriptomics workflows.
 - [TissUUmaps](https://tissuumaps.github.io/) - Visualizer of NGS data, plot millions of points and interact, gate, export. ISS rounds and base visualization.
 
 

docs/awesome/awesome-browser-extensions-for-github.md

@@ -25,7 +25,7 @@ Want to know more about this process? Check out the [Codeless Contributions with
 
 Shows notifications when you get a new notification on GitHub and provides quick access to all notifications in a popup.
 
-Installs: 135 | Stars: 78 | Last update: 2 Jun 2023
+Installs: 131 | Stars: 78 | Last update: 2 Jun 2023
 
 
 Removes clutter from your pull request by automatically marking as viewed files that aren't worth reviewing.
@@ -40,12 +40,12 @@ Installs: 599 | Stars: 62 | Last update: n/a
 
 Visualize GitHub repos as d3 force-directed graphs. The extension gives you a quick overview of the size and composition of any repo.
 
-Installs: 23 | Stars: 14 | Last update: 25 Apr 2022
+Installs: 22 | Stars: 14 | Last update: 25 Apr 2022
 
 
 The CoderStats link for GitHub Chrome extension displays a link to the CoderStats page for the currently displayed user or organization profile page on GitHub.
 
-Installs: 16 | Stars: 20 | Last update: 2 May 2023
+Installs: 17 | Stars: 20 | Last update: 2 May 2023
 
 
 Show the # of PRs and other contributors stats in the Issues/PRs tab. Can be helpful for maintainers that want to know if it's a contributor's first PR.
@@ -55,12 +55,12 @@ Installs: 9 | Stars: 458 | Last update: 1 Mar 2021
 
 Displays size of each file, download link and an option of copying file contents directly to clipboard
 
-Installs: 673 | Stars: 1980 | Last update: 22 Apr 2021
+Installs: 667 | Stars: 1981 | Last update: 22 Apr 2021
 
 
 Easily search GIPHY to add a GIF into any GitHub comment box.
 
-Installs: 555 | Stars: 169 | Last update: 18 Jan 2024
+Installs: 541 | Stars: 169 | Last update: 18 Jan 2024
 
 
 Find the best GIFs for your awesome pull requests.
@@ -70,7 +70,7 @@ Installs: 136 | Stars: 22 | Last update: n/a
 
 Quickly browse the history of a file from any git repository.
 
-Installs: 224 | Stars: 13470 | Last update: 13 Oct 2023
+Installs: 223 | Stars: 13469 | Last update: 13 Oct 2023
 
 
 GitHub provides a page that only shows diffs with a .diff at the end of the URL of the pull request. This browser extension makes it easier to view csv diffs by using daff on that page.
@@ -80,7 +80,7 @@ Installs: 34 | Stars: 4 | Last update: n/a
 
 Code folding - the ability to selectively hide and display sections of a code - is an invaluable feature in many text editors and IDEs. Now, developers can utilize that same style code-folding while poring over source code on the web in GitHub. Works for any type of indentation- spaces or tabs.
 
-Installs: 130 | Stars: 288 | Last update: 12 Jan 2017
+Installs: 128 | Stars: 288 | Last update: 12 Jan 2017
 
 
 Set custom tab size for code view on GitHub.com
@@ -105,12 +105,12 @@ Installs: 1000 | Stars: 143 | Last update: n/a
 
 Neat hovercards for GitHub.
 
-Installs: 17830 | Stars: 1799 | Last update: n/a
+Installs: 17833 | Stars: 1800 | Last update: n/a
 
 
 Colorize issue and PR links to see their status (open, closed, merged).
 
-Installs: 106 | Stars: 296 | Last update: 9 Dec 2023
+Installs: 105 | Stars: 296 | Last update: 9 Dec 2023
 
 
 Displays npm package stats on GitHub
@@ -120,7 +120,7 @@ Installs: 606 | Stars: 57 | Last update: n/a
 
 Lists repositories that are similar to the one being viewed
 
-Installs: 37 | Stars: 45 | Last update: 10 Aug 2022
+Installs: 36 | Stars: 45 | Last update: 10 Aug 2022
 
 
 Revert closed GitHub issues from purple back to red
@@ -145,7 +145,7 @@ Installs: 39 | Stars: 48 | Last update: 25 Sep 2023
 
 This extension adds the simplicity of WYSIWYG editing to issues, comments, pull requests, wikis and discussions in GitHub. It accepts Markdown input and offers productive writing, starting with tables.
 
-Installs: 130 | Stars: 365 | Last update: 14 Nov 2023
+Installs: 127 | Stars: 365 | Last update: 14 Nov 2023
 
 
 View and create Linear tickets from any GitHub PR or issue.
@@ -160,7 +160,7 @@ Installs: 2000 | Stars: 291 | Last update: n/a
 
 It can make the sub-directories and files of github repository as zip and download it
 
-Installs: 3685 | Stars: 35 | Last update: 21 Aug 2023
+Installs: 3644 | Stars: 35 | Last update: 21 Aug 2023
 
 
 Create, save, edit, pin, search and delete filters that you commonly use on the Github Issues and Pull Requests pages. You are able to scope filters to be shown globally (on each repo) or only have them show up on the repo you create them on. Pinning filters is also a feature that this extension allows you to do. So if you have several filters you use daily - you have a way to quickly access them, at the top of your list.
@@ -175,12 +175,12 @@ Installs: 35 | Stars: 227 | Last update: 30 Jun 2021
 
 Replace browser new tab screen with GitHub trending projects.
 
-Installs: 2000 | Stars: 347 | Last update: n/a
+Installs: 2000 | Stars: 348 | Last update: n/a
 
 
 Hide dotfiles from the GitHub file browser.
 
-Installs: 42 | Stars: 318 | Last update: 16 Sep 2021
+Installs: 41 | Stars: 318 | Last update: 16 Sep 2021
 
 
 Allows you to toggle between the normal GitHub contribution chart and an isometric pixel art version.
@@ -190,7 +190,7 @@ Installs: 10000 | Stars: 3432 | Last update: n/a
 
 Browser extension to add git graph to GitHub website.
 
-Installs: 460 | Stars: 2645 | Last update: 1 Jan 2024
+Installs: 453 | Stars: 2650 | Last update: 1 Jan 2024
 
 
 Chrome extension that adds a button in browser and links this button to a GitHub repository that you will configure, then on any webpage just click this extension button and it will add the given link with the title of the page in that repository.
@@ -200,12 +200,12 @@ Installs: 57 | Stars: 235 | Last update: n/a
 
 See forks with the most stars under the names of repositories.
 
-Installs: 353 | Stars: 574 | Last update: 4 Jul 2021
+Installs: 349 | Stars: 574 | Last update: 4 Jul 2021
 
 
 Show Material icons for files/folders in repository file viewer. Display the same icons from vscode-material-icon-theme VSCode extension.
 
-Installs: 821 | Stars: 434 | Last update: 20 Feb 2024
+Installs: 809 | Stars: 435 | Last update: 20 Feb 2024
 
 
 An extension that creates direct links to imported modules, external or internal, on source code on GitHub. Supports multiple languages, including common ones like Rust, Go, Python and Ruby, but also odd ones like Nim, Haskell, Julia and Elm.
@@ -220,12 +220,12 @@ Installs: 17 | Stars: 15 | Last update: n/a
 
 A Chrome and Firefox extension to quickly see your notifications in a popup without leaving the current page.
 
-Installs: 76 | Stars: 140 | Last update: 6 Apr 2023
+Installs: 75 | Stars: 140 | Last update: 6 Apr 2023
 
 
 Displays your GitHub notifications unread count. Supports GitHub Enterprise and an option to only show unread count for issues you're participating in. You can click the icon to quickly see your unread notifications.
 
-Installs: 566 | Stars: 1782 | Last update: 12 Jul 2023
+Installs: 552 | Stars: 1783 | Last update: 12 Jul 2023
 
 
 Filter your pull requests/issues in different categories giving you a big boost in productivity. Also suggests new trending repositories.
@@ -235,7 +235,7 @@ Installs: 2 | Stars: 136 | Last update: 16 Jan 2020
 
 OctoLinker is the easiest and best way to navigate between files and projects on GitHub. It supports languages such as JavaScript, Ruby, Go, PHP, JAVA and more. It works with package.json as well as with Gemfiles.
 
-Installs: 12838 | Stars: 5231 | Last update: 13 Nov 2022
+Installs: 12824 | Stars: 5231 | Last update: 13 Nov 2022
 
 
 OctoPermalinker is a browser extension that searches GitHub comments/files for links to files on branches, and adds a link to where the branch pointed when the comment/file was made/updated. This helps you avoid following a link that was broken after being posted. For context, here's some discussion about broken GitHub links: [Don't link to line numbers in GitHub](https://news.ycombinator.com/item?id=8046710).
@@ -252,7 +252,7 @@ Installs: 4000 | Stars: 960 | Last update: n/a
 
 Useful for developers who frequently read source in GitHub and do not want to download or checkout too many repositories.
 
-Installs: 37666 | Stars: 22650 | Last update: 4 Jan 2024
+Installs: 37572 | Stars: 22652 | Last update: 4 Jan 2024
 
 
 Revert GitHub's UI back to its classic look (before the June 23, 2020 update that has a flat, rounded and more whitespaced design).
@@ -262,12 +262,12 @@ Installs: 61 | Stars: 224 | Last update: 6 Aug 2021
 
 This browser extension allows you to open files in your IDE directly from GitHub, assuming the repository you are working on is cloned on your computer. When a fragment of a file is displayed, your IDE opens the file and puts the cursor at the desired line.
 
-Installs: 42 | Stars: 68 | Last update: 23 Sep 2023
+Installs: 41 | Stars: 68 | Last update: 23 Sep 2023
 
 
 Helps you keep track of incoming and outgoing PRs, and notifies you when you receive a pull request on GitHub.
 
-Installs: 42 | Stars: 113 | Last update: 21 Jun 2023
+Installs: 41 | Stars: 113 | Last update: 21 Jun 2023
 
 
 Browser extension that shows which pull requests contain changes related to a file.
@@ -277,12 +277,12 @@ Installs: 4 | Stars: 96 | Last update: 15 Oct 2020
 
 Extension that simplifies the GitHub interface and adds useful features.
 
-Installs: 8825 | Stars: 22808 | Last update: 8 Feb 2024
+Installs: 8692 | Stars: 22818 | Last update: 8 Feb 2024
 
 
 Are they tabs? Are they spaces? How many? Never wonder again! Renders spaces as `·` and tabs as `→` in all the code on GitHub.
 
-Installs: 24 | Stars: 74 | Last update: 25 Aug 2018
+Installs: 23 | Stars: 74 | Last update: 25 Aug 2018
 
 
 Introduces the Explore tab in the pull request interface where you can review changes ordered by importance and see the semantic context surrounding each change.
@@ -298,7 +298,7 @@ The Sourcegraph browser extension gives GitHub IDE-like powers when you're viewi
 4. Hover tooltips
 5. File tree navigation
 
-Installs: 1013 | Stars: 9547 | Last update: 14 Apr 2023
+Installs: 994 | Stars: 9549 | Last update: 14 Apr 2023
 
 
 Make tab indented code more readable by forcing the tab size to 4 instead of 8.
@@ -323,12 +323,12 @@ Installs: 70000 | Stars: n/a | Last update: n/a
 
 All your issues, PRs, repos and other work documents right in your new tab
 
-Installs: 170 | Stars: n/a | Last update: n/a
+Installs: 167 | Stars: n/a | Last update: n/a
 
 
 file tree for github, and more than that.
 
-Installs: 371 | Stars: n/a | Last update: 15 Dec 2023
+Installs: 365 | Stars: n/a | Last update: 15 Dec 2023
 
 
 Add breakpoints at 1400px, 1600px and 1800px for full GitHub experience on large screens. Also removes the truncating of file and directory names in the repository browser.
@@ -338,12 +338,12 @@ Installs: 2000 | Stars: 131 | Last update: n/a
 
 gitpod streamlines developer workflows by providing ready-to-code development environments in your browser - powered by vs code.
 
-Installs: 2428 | Stars: 135 | Last update: 7 Mar 2024
+Installs: 2388 | Stars: 135 | Last update: 7 Mar 2024
 
 
 When viewing a repository on github.com that has a package.json file, this extension will introspect the dependencies in package.json and display links and description for each dependency, just below the repo's README.
 
-Installs: 88 | Stars: 742 | Last update: 20 Dec 2023
+Installs: 87 | Stars: 742 | Last update: 20 Dec 2023
 
 
 Extends GitHub pages with math, diagrams, embedded YouTube videos etc.

docs/awesome/awesome-fiber.md

@@ -91,6 +91,7 @@ List of middlewares that are created by the Fiber community.
 - [zeiss/fiber-goth](https://github.com/ZEISS/fiber-goth) -  Simple middleware to integrate authentication to your Fiber applications.
 - [zeiss/fiber-authz](https://github.com/ZEISS/fiber-authz) - A middleware to secure routes in Fiber with a defined RBAC model.
 - [zeiss/fiber-htmx](https://github.com/ZEISS/fiber-htmx) - A middleware for using HTMX in Fiber.
+- [jsorb84/ssefiber](https://github.com/jsorb84/ssefiber) - A basic SSE Implementation for Fiber.
 
 ## 🚧 Boilerplates
 Premade boilerplates for Fiber.

docs/awesome/awesome-mac.md

@@ -174,6 +174,7 @@ Any comments, suggestions? [Let us know!](https://github.com/jaywcjlove/awesome-
 * [bindPDF](https://github.com/vishaltelangre/bindPDF) - Combine multiple PDF files into a single PDF file using a friendly UI. [![Open-Source Software][OSS Icon]](https://github.com/vishaltelangre/bindPDF) ![Freeware][Freeware Icon]
 * [CHM Reader](http://www.hewbo.com/chm-reader.html) - Read Compiled HTML (.chm) documents on your Mac. ![Freeware][Freeware Icon]
 * [Chmox](http://chmox.sourceforge.net/) - Read CHM documents on your Mac. ![Freeware][Freeware Icon]
+* [Highlights](https://highlightsapp.net) - The PDF Reader for Research on Mac, iPad & iPhone. ![Freeware][Freeware Icon]
 * [PDF Expert](https://pdfexpert.com/) - Read, annotate and edit PDFs, change text and images.
 * [PDFgear](https://www.pdfgear.com/) - AI-integrated PDF editor providing view, edit, annotate, protect, convert, Copilot assistant, and more possibilities. ![Freeware][Freeware Icon] [![App Store][app-store Icon]](https://apps.apple.com/app/pdfgear-pdf-editor-for-adobe/id1615523079)
 * [PDF Reader Pro](http://www.pdfreaderpro.com) - You Can view, create, sign, convert and compress any PDF documents. [![App Store][app-store Icon]](https://itunes.apple.com/us/app/pdf-reader-pro-your-pdf-office/id825459243?mt=12)

docs/awesome/awesome-neovim.md

@@ -822,6 +822,7 @@ These colorschemes may not specialize in Tree-sitter directly but are written in
 - [chrisgrieser/nvim-tinygit](https://github.com/chrisgrieser/nvim-tinygit) - Lightweight and nimble git client.
 - [niuiic/git-log.nvim](https://github.com/niuiic/git-log.nvim) - Check git log of the selected code.
 - [2KAbhishek/co-author.nvim](https://github.com/2KAbhishek/co-author.nvim) - Quickly add co-authors to commits.
+- [isak102/telescope-git-file-history.nvim](https://github.com/isak102/telescope-git-file-history.nvim) - Open/preview contents of the current file at a specific commit, without using git checkout.
 
 ### GitHub