Moose installation HPC cluster

[412120052]

Dear friends,
i am facing the following error while installing moose through Remote access in the institute HCP cluster.

(base) [sankarganesh.mme.nitt@login02 ~]$ export CC=mpicc
(base) [sankarganesh.mme.nitt@login02 ~]$ export CXX=mpicxx
(base) [sankarganesh.mme.nitt@login02 ~]$ export F90=mpif90
(base) [sankarganesh.mme.nitt@login02 ~]$ export F77=mpif77
(base) [sankarganesh.mme.nitt@login02 ~]$ export FC=mpif90
(base) [sankarganesh.mme.nitt@login02 ~]$ source moose_profile
-bash: source: moose_profile: is a directory
(base) [sankarganesh.mme.nitt@login02 ~]$ mkdir ~/projects
cd ~/projects
git clone https://github.com/idaholab/moose.git
cd moose
git checkout master
cd ~/projects/moose
..........
unset PETSC_DIR PETSC_ARCH
./scripts/update_and_rebuild_petsc.sh
.........
TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157)                                        *******************************************************************************
         UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for details):
-------------------------------------------------------------------------------
Unable to find mpi in default locations!
Perhaps you can specify with --with-mpi-dir=<directory>
If you do not want MPI, then give --with-mpi=0
You might also consider using --download-mpich instead
*******************************************************************************

There was an error. Exiting...

Kindly help me with this

[milljm]

Can you attach the file its asking us to check? configure.log

[GiudGiud]

also this command did not work

(base) [sankarganesh.mme.nitt@login02 ~]$ source moose_profile
-bash: source: moose_profile: is a directory

I m not sure if it was part of your build routine

[412120052]

Dear Friends,
I am very new to moose. Kindly help me to install the moose. And I have to know the advantage of moose installation in an HPC cluster over a normal system. My institute has an HPC cluster. I am trying to install the moose (HPC cluster) and am facing more errors while using this link (https://mooseframework.inl.gov/getting_started/installation/hpc_install_moose.html). If it is possible kindly send me the whole procedure from the initial stage. Thanking You

[GiudGiud]

vim (and vi) is a text editor.

If you're working on a cluster it's very likely you will have one of those installed.
You do something like:
vi .moose_profile to open a text file with that name, and when you save it creates the file.

What are you creating this profile file for? To load an environment?

vi takes a bit of getting used to, you should google it a little before trying.

[Emmanuel-324]

I was running a script file that contained a line with that file and it could not be found and yes i am using a cluster. Below is the script file

#!/bin/bash                                                                     
#SBATCH --job-name kks_multiphase_largescale_large                                                 
#SBATCH --out  kks_multiphase_largescale_large.out        
#SBATCH --nodes 1                                                               
#SBATCH --ntasks 2
#SBATCH --cpus-per-task 8
#SBATCH --account amcorrosion                                                  
##SBATCH --partition normal_q                                                   
#SBATCH --time=100:00:00    
##SBATCH --mem=gpu:pascal:4                                                     
#SBATCH --export=NONE # this makes sure the compute environment is clean        
#SBATCH --mail-user emmanuel324@vt.edu
#SBATCH --mail-type=begin
#SBATCH --mail-type=end


source /home/emmanuel324/.moose_profile
module load apps site/tinkercliffs/easybuild/setup
module load apps site/tinkercliffs-rome/easybuild/setup
module load OpenMPI/4.1.1-GCC-10.3.0
module load CMake/3.20.1-GCCcore-10.3.0
module load Anaconda3/2020.11


cd "${submitdir}"
rm kks_multiphase_largescale_large_out.e*
#rm kks_multiphase_largescale_large_csv*
#rm kks_multiphase_largescale_large_out.e*
mpirun --mca orte_base_help_aggregate 0 -np 2 /home/emmanuel324/projects/belson/belson-opt  -i  kks_multiphase_largescale_large.i

[GiudGiud]

oh so you just took this script from someone else.
They must have had some bash commands in this .moose_profile file

from your other post, when you submit the job, even module load fails. That needs to be addressed

[Emmanuel-324]

I have resolved the module load by making some changes to the previous post and replacing it with module reset.

Ps: The person i took this script from said he also took it from someone else and does not know what it is. When we both run ls -la my .moose_profile seems to be empty whiles he has files in his. Can you show me a way he can send me those file and I store it in mine or create my own. My colleague and I are working in the same research group.

[GiudGiud]

At INL, people would likely have something like this in their .moose_profile file. But it s not a requisite! I dont have a moose_profile file

This loads the pre-installed BISON app on the INL cluster, as well as all the right compilers and MPI

module load use.moose moose-apps bison