local paraview in moose env throws seg fault but sustem paraview runs fine

[tckosvic]

Paraview as run local in moose environment throws seg fault. See below:

(moose) tom@localhost:~/projects> paraview

Loguru caught a signal: SIGSEGV
Stack trace:
36      0x55ff29e018ad paraview(+0x88ad) [0x55ff29e018ad]
35      0x7f1571828279 __libc_start_main + 139
34      0x7f15718281b0 /lib64/libc.so.6(+0x281b0) [0x7f15718281b0]
33      0x55ff29e01592 paraview(+0x8592) [0x55ff29e01592]
32      0x55ff29e07071 paraview(+0xe071) [0x55ff29e07071]
31      0x55ff29e0682d paraview(+0xd82d) [0x55ff29e0682d]
30      0x7f15715894ea pqParaViewBehaviors::pqParaViewBehaviors(QMainWindow*, QObject*) + 2506
29      0x7f15714dfc4b pqAlwaysConnectedBehavior::pqAlwaysConnectedBehavior(QObject*) + 331
28      0x7f157072e7b9 pqObjectBuilder::createServer(pqServerResource const&, int) + 409
27      0x7f156f7c17f5 vtkSMSession::ConnectToSelf(int) + 37
26      0x7f157174a9fc vtkProcessModule::RegisterSession(vtkSession*) + 172
25      0x7f156eeef9f2 /home/tom/mambaforge3/envs/moose/bin/../lib/libvtkCommonCore-pv5.10.so.1(+0x4ef9f2) [0x7f156eeef9f2]
24      0x7f156edd3c79 vtkCallbackCommand::Execute(vtkObject*, unsigned long, void*) + 25
23      0x7f1571a3a31e /home/tom/mambaforge3/envs/moose/bin/../lib/libvtkGUISupportQt-pv5.10.so.1(+0x2831e) [0x7f1571a3a31e]
22      0x7f156fbdf5c3 /home/tom/mambaforge3/envs/moose/bin/../lib/libQt5Core.so.5(+0x1df5c3) [0x7f156fbdf5c3]
21      0x7f15706920e3 pqServerManagerObserver::connectionCreated(long long) + 67
20      0x7f156fbdf5c3 /home/tom/mambaforge3/envs/moose/bin/../lib/libQt5Core.so.5(+0x1df5c3) [0x7f156fbdf5c3]
19      0x7f1570780f4d pqServerManagerModel::onConnectionCreated(long long) + 861
18      0x7f157068ec43 pqServerManagerModel::serverAdded(pqServer*) + 67
17      0x7f156fbdf5c3 /home/tom/mambaforge3/envs/moose/bin/../lib/libQt5Core.so.5(+0x1df5c3) [0x7f156fbdf5c3]
16      0x7f1571549c95 pqDefaultViewBehavior::onServerCreation(pqServer*) + 85
15      0x7f156f6c92f5 vtkPVSessionCore::GatherInformation(unsigned int, vtkPVInformation*, unsigned int) + 389
14      0x7f156f6c8fc6 vtkPVSessionCore::GatherInformationInternal(vtkPVInformation*, unsigned int) + 54
13      0x7f156cfb781a vtkPVRenderingCapabilitiesInformation::CopyFromObject(vtkObject*) + 10
12      0x7f156cfb77ee vtkPVRenderingCapabilitiesInformation::GetLocalCapabilities() + 334
11      0x7f156bb4bbcd vtkOpenGLRenderWindow::SupportsOpenGL() + 1021
10      0x7f156bbe9d53 vtkXOpenGLRenderWindow::WindowInitialize() + 19
9       0x7f156bbed551 vtkXOpenGLRenderWindow::CreateAWindow() + 977
8       0x7f15658435b4 /lib64/libGLX.so.0(+0x1b5b4) [0x7f15658435b4]
7       0x7f15603b5378 /lib64/libGLX_mesa.so.0(+0x42378) [0x7f15603b5378]
6       0x7f15603b4fd1 /lib64/libGLX_mesa.so.0(+0x41fd1) [0x7f15603b4fd1]
5       0x7f153dedd3d7 /usr/lib64/dri/swrast_dri.so(+0xdd3d7) [0x7f153dedd3d7]
4       0x7f153dedb8e0 /usr/lib64/dri/swrast_dri.so(+0xdb8e0) [0x7f153dedb8e0]
3       0x7f157189528f /lib64/libc.so.6(+0x9528f) [0x7f157189528f]
2       0x7f153e0a54eb /usr/lib64/dri/swrast_dri.so(+0x2a54eb) [0x7f153e0a54eb]
1       0x7f15603532a3 _glapi_add_dispatch + 147
0       0x7f157183f190 /lib64/libc.so.6(+0x3f190) [0x7f157183f190]
(   0.648s) [paraview        ]                       :0     FATL| Signal: SIGSEGV
Segmentation fault (core dumped)
(moose) tom@localhost:~/projects> `

But separate system paraview run with /usr/bin/paraview starts up fine and can access moose output file at least for Example1.

Not a major issue since I can view output using system paraview. I reinstalled local paraview in moose env using conda but no change. Any one have idea of what is killing local paraview.

tom kosvic

[milljm]

@grmnptr or @lindsayad You have a local Linux machine right? Can you mamba create paraview paraview and see if it launches?

Also, when I attempted to do the same, the first run failed. A second worked. Very odd.

❯ mamba create -n paraview paraview
❯ mamba activate paraview
❯ paraview
dyld[7821]: Library not loaded: @rpath/libQt5Widgets.5.dylib
  Referenced from: <FD4987AE-247F-39AC-A7D7-A1AD55254246> /Users/milljm/mambaforge3/pkgs/paraview-5.11.2-py312hfea8ab8_102_qt/Applications/paraview.app/Contents/MacOS/paraview
  Reason: tried: '/Users/milljm/mambaforge3/pkgs/paraview-5.11.2-py312hfea8ab8_102_qt/Applications/paraview.app/Contents/MacOS/../../../../lib/libQt5Widgets.5.dylib' (no such file), '/Users/milljm/mambaforge3/pkgs/paraview-5.11.2-py312hfea8ab8_102_qt/Applications/paraview.app/Contents/MacOS/../../../../lib/libQt5Widgets.5.dylib' (no such file), '/usr/local/lib/libQt5Widgets.5.dylib' (no such file), '/usr/lib/libQt5Widgets.5.dylib' (no such file, not in dyld cache)
zsh: abort      paraview
❯ paraview       <----- this worked immediately after the above error... lol?

EDIT: What I am getting at, is that this feels finicky.

[lindsayad]

I do but I do not have mamba installed. If @grmnptr can't help, then I'll install it and test this

[milljm]

@tckosvic, Is this a Windows WSL instance? Or a full-native Linux machine? Also, what Linux flavor are you running? As well as CPU architecture (x86_64, arm64, etc).

Thanks!