Libmesh SHA Picking for Custom Docker Image

[aikubo]

Building MOOSE in Custom Docker Image

Hello Moose Community and specifically @loganharbour

My goal is to build a MOOSE docker image based on the provided Dockerfile with my own base image and custom PETSc options. I saw there was discussion of deprecating the docker file but the infrastructure I work with needs a Docker Image. I can build my own and maintain it once I get it going.

However, I'm having trouble building MOOSE with no custom options. I get a huge log of C++ compile errors like this:

/opt/moose/framework/build/header_symlinks/Assembly.h:3123:48: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'const long unsigned int')
 3123 |     const auto & sparse_derivatives = residuals[i].derivatives();
      |                                       ~~~~~~~~~^
make: *** [/opt/moose/framework/build.mk:159: /opt/moose/framework/build/unity_src/bounds_Unity.x86_64-pc-linux-gnu.opt.lo] Error 1

I get errors with the release and next branches and no changes or additional options besides my own image for the base which is just a relatively bare bones Ubuntu Focal image.

I believe this is due to a mismatch between the version of MOOSE I am using and Libmesh which is set by a SHA in the docker container.

I can update the Libmesh reference but in general how do I find a SHA to pin which will work with the current version of MOOSE?

Thank you!

My Image

• Python 3.9.23
• Based on official Ubuntu 20.04

---

Diagnostics

Running the docker container after the failed compile to see the status:

`diagnostics.sh` output

root@cb51423e00b6:/opt/moose/scripts# ./diagnostics.sh
###################################################################################################
Influential Environment Variables

CC=mpicc
CONDA_CHANNEL=https://conda.software.inl.gov/public
CURL_CA_BUNDLE=
CXX=mpicxx
LIBMESH_DIR=/usr/local
MOOSE_DIR=/opt/moose
MOOSE_JOBS=6
PATH=/opt/venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
PETSC_DIR=/usr/local
REQUESTS_CA_BUNDLE=
SSL_CERT_FILE=
WASP_DIR=/usr/local/wasp
###################################################################################################
Compiler(s) (CC CXX FC F77 F90):

which $CC; /usr/local/bin/mpicc
$CC --version; gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
$CC -show; gcc -I/usr/local/include -L/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -Wl,--enable-new-dtags -lmpi

which $CXX; /usr/local/bin/mpicxx
$CXX --version; g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
$CXX -show; g++ -I/usr/local/include -L/usr/local/lib -lmpicxx -Wl,-rpath -Wl,/usr/local/lib -Wl,--enable-new-dtags -lmpi

FC      not set
F77     not set
F90     not set

FAIL: One or more compiler environment variables not set, or set incorrectly
###################################################################################################
Python Sanity Checks

/usr/bin/env python3 --version; (reporting as: Python 3.9.23) matches
which python3 python;

/opt/venv/bin/python3 --version; == Python 3.9.23
/opt/venv/bin/python --version; == Python 3.9.23

OK
###################################################################################################
Python Modules (TestHarness, run-ability)

OK

checks FAILED

---

libMesh configure log

---------------------------------------------
----------- Configuring libMesh -------------
---------------------------------------------
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /opt/moose/scripts/../libmesh/build-aux/install-sh -C
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '0' is supported by ustar format... yes
checking whether GID '0' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether make supports nested variables... (cached) yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for src/base/libmesh.C... no
<<< Configuring build directory for VPATH build >>>
checking for perl... /usr/bin/perl
note: MPI library path not given...
note: MPI library path not given...
checking whether make supports the include directive... yes (GNU style)
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to enable C11 features... none needed
checking whether mpicc understands -c and -o together... yes
checking dependency style of mpicc... gcc3
checking whether the compiler supports GNU Fortran... yes
checking whether mpif90 accepts -g... yes
checking whether the compiler supports GNU Fortran 77... yes
checking whether mpif90 accepts -g... yes
checking whether the compiler supports GNU C++... yes
checking whether mpicxx accepts -g... yes
checking for mpicxx option to enable C++11 features... none needed
checking dependency style of mpicxx... gcc3
<<< C++ compiler is gcc-9.x >>>
checking for a sed that does not truncate output... /usr/bin/sed
checking for C++ compiler vendor... gnu
configure: Seeking a C++ standard between "2014" and "2017"
checking whether mpicxx supports C++17 features by default... no
checking whether mpicxx supports C++17 features with -std=gnu++17... yes
checking for C++11 auto keyword support... yes
checking for C++11 range-based for loop support... yes
checking for C++11 initializer list support... yes
checking for C++11 std::unique_ptr support... yes
checking for C++11 std::make_unique workaround support... yes
checking for C++11 std::tuple support... yes
checking for C++11 lambda support... yes
checking for C++11 fixed type enumeration support... yes
checking for C++11 fixed type enumeration forward declaration support... yes
checking for C++11 override keyword support... yes
checking for C++11 move constructor support... yes
checking for C++11 deleted functions support... yes
checking for C++11 defaulted functions support... yes
checking for C++11 nullptr support... yes
checking for C++11 'final' keyword support... yes
checking for C++11 decltype support... yes
checking for C++11 std::begin/end support for arrays... yes
checking for C++11 std container erase() functions returning iterators... yes
checking for C++11 std container emplace() functions... yes
checking for C++11 std::iota algorithm... yes
checking for C++11 std::vector::data() API... yes
checking for C++11 std::shared_ptr support... yes
checking for C++11 rvalue references support... yes
checking for C++11 std::to_string() support... yes
checking for C++11 constexpr support... yes
checking for C++11 variadic template support... yes
checking for C++11 alias declarations support... yes
checking for C++11 std::array... yes
checking for C++11 std::isnan... yes
checking for C++11 std::isinf... yes
checking for C++17 std::*::merge... yes
configure: Found C++17 standard support
checking whether mpicxx -std=gnu++17 supports C++14 features by default... yes
configure: Found C++14 standard support
checking whether mpicxx -std=gnu++17 supports C++11 features by default... yes
configure: Found C++11 standard support
configure: Using support for C++17 standard
<<< Adding -ftrapping-math for FPE safety >>>
<<< Configuring libMesh with methods "opt dbg" >>>
<<< Compiler warnings are just warnings >>>
<<< Disabling extra paranoid compiler warnings >>>
checking for C++14 std::make_unique support... yes
checking for C++11 std::regex support... yes
checking for C++11 <thread> support... yes
checking for C++11 <condition_variable> support... yes
checking for C++11 <type_traits> support... yes
checking for C++11 std::asinh support in <cmath>... yes
checking for C++11 std::acosh support in <cmath>... yes
checking for C++11 std::atanh support in <cmath>... yes
checking for C++11 std::asinh(complex) support in <complex>... yes
checking for C++11 std::acosh(complex) support in <complex>... yes
checking for C++11 std::atanh(complex) support in <complex>... yes
checking for C++11 std::erf support in <cmath>... yes
checking for C++17 fallthrough attribute support... yes, but disabled.
checking for __attribute__ ((fallthrough)) support... yes
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by mpicc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from mpicc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if mpicc supports -fno-rtti -fno-exceptions... no
checking for mpicc option to produce PIC... -fPIC -DPIC
checking if mpicc PIC flag -fPIC -DPIC works... yes
checking if mpicc static flag -static works... yes
checking if mpicc supports -c -o file.o... yes
checking if mpicc supports -c -o file.o... (cached) yes
checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... mpicxx -std=gnu++17 -E
checking for ld used by mpicxx -std=gnu++17... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the mpicxx -std=gnu++17 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for mpicxx -std=gnu++17 option to produce PIC... -fPIC -DPIC
checking if mpicxx -std=gnu++17 PIC flag -fPIC -DPIC works... yes
checking if mpicxx -std=gnu++17 static flag -static works... yes
checking if mpicxx -std=gnu++17 supports -c -o file.o... yes
checking if mpicxx -std=gnu++17 supports -c -o file.o... (cached) yes
checking whether the mpicxx -std=gnu++17 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for mpif90 option to produce PIC... -fPIC
checking if mpif90 PIC flag -fPIC works... yes
checking if mpif90 static flag -static works... yes
checking if mpif90 supports -c -o file.o... yes
checking if mpif90 supports -c -o file.o... (cached) yes
checking whether the mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for mpif90 option to produce PIC... -fPIC
checking if mpif90 PIC flag -fPIC works... yes
checking if mpif90 static flag -static works... yes
checking if mpif90 supports -c -o file.o... yes
checking if mpif90 supports -c -o file.o... (cached) yes
checking whether the mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking Major version... 1
checking Minor version... 9
checking Point version... 0-pre
checking whether ln -s works... yes
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for pkg-config... no
checking whether the compiler implements namespaces... yes
checking for mpicxx -std=gnu++17 options needed to detect all undeclared functions... none needed
---------------------------------------------
------- Configuring compiler features -------
---------------------------------------------
<<< Default floating point is double precision (double) >>>
checking for C/C++ restrict keyword... no
checking for pwd.h... yes
<<< Configuring library with getpwuid >>>
<<< Configuring library with exception throwing support >>>
<<< Configuring library with compile timestamps >>>
checking size of short int... 2
checking size of int... 4
checking size of unsigned int... 4
checking size of size_t... 8
checking size of long int... 8
checking size of float... 4
checking size of double... 8
checking size of void *... 8
checking size of function_pointer... 8
checking whether the compiler supports Run-Time Type Identification... yes
checking for getopt.h... yes
checking for stdlib.h... (cached) yes
checking for sys/time.h... yes
checking for process.h... no
checking for csignal... yes
checking for sys/resource.h... yes
checking whether the compiler has locale... yes
checking whether the compiler has stringstream... yes
checking for fenv.h... yes
checking for xmmintrin.h... yes
checking whether sigaction is declared... yes
checking for mkdir with two arguments... yes
checking for direct.h... no
checking whether _mkdir is declared... no
checking for mkstemp... yes
checking for gettimeofday... yes
checking for sys/utsname.h... yes
checking whether the compiler supports std::unordered_multimap... yes
checking whether the compiler supports std::unordered_map... yes
checking whether the compiler supports std::unordered_multiset... yes
checking whether the compiler supports std::unordered_set... yes
checking whether the compiler supports std::hash... yes
checking for library containing dlopen... -ldl
checking whether the c++ compiler supports dlopen/dlsym/dlclose... yes
checking whether the compiler supports GCC C++ ABI name demangling... yes
checking whether the c++ compiler supports glibc backtrace... yes
checking if errno.h can be wrapped in namespace... yes
---------------------------------------------
----- Done configuring compiler features ----
---------------------------------------------
---------------------------------------------
----- Configuring core library features -----
---------------------------------------------
configuring gdb command... "no"
>>> INFO: Disabling library warnings <<<
>>> Configuring library without warnings <<<
<<< Configuring library with deprecated code support >>>
<<< Configuring library to require ``include "libmesh/etc.h"'' style >>>
<<< Configuring library to keep names in libMesh namespace >>>
configuring size of boundary_id... 2
requested size of dof_id... 4
configuring size of processor_id... 4
configuring size of subdomain_id... 2
<<< Configuring library with unique id support >>>
configuring size of unique_id... 8
<<< Configuring library with AMR support >>>
<<< Configuring library with variational smoother support >>>
<<< Configuring library with periodic BC support >>>
<<< Configuring library with Dirichlet constraint support >>>
<<< --enable-parmesh is deprecated; use --enable-distmesh >>>
configuring size of mapvector chunks: 1
<<< Configuring library to use ghosted local vectors >>>
<<< Configuring library to store node valence >>>
<<< Configuring library with higher order p-FEM shapes >>>
<<< Configuring library with second derivatives >>>
<<< Configuring library with real number support >>>
<<< Configuring library with reference counting support >>>
<<< Configuring library example suite support >>>
---------------------------------------------
-- Done configuring core library features ---
---------------------------------------------
---------------------------------------------
----- Configuring for optional packages -----
---------------------------------------------
checking for built-in XDR support... yes
checking for boostlib >= 1.57.0... yes
<<< Using external boost installation >>>
checking for boost::movelib::unique_ptr support... yes
note: Checking /lib and /include for MPI
note: Could not find /lib/libmpi(.a/.so/.dylib)
mpicxx -std=gnu++17 Compiler Supports MPI
<<< Found PETSc 3.21.4 installation in /usr/local ... >>>
checking whether we can compile a trivial PETSc program... yes
checking for TAO support via PETSc... yes
>>> adopting PETSc dof_id size: 8
checking for /usr/local/include/slepcversion.h... yes
<<< Querying SLEPc configuration from /usr/local/lib/slepc/conf/slepc_variables >>>
checking whether we can compile a trivial SLEPc program... yes
<<< Configuring library with SLEPc version 3.21.1 support >>>
<<< Trilinos disabled, requires --with-dof-id-bytes=4 >>>
<<< User requested thread model: openmp >>>
checking for OpenMP flag of C++ compiler... -fopenmp
checking for OpenMP flag of C compiler... -fopenmp
checking for OpenMP flag of Fortran 77 compiler... unknown
<<< Configuring library with C OpenMP support >>>
<<< Configuring library with OpenMP support >>>
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... no
checking whether pthreads work with -Kthread... no
checking whether pthreads work with -kthread... no
checking for the pthreads library -llthread... no
checking whether pthreads work with -pthread... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
<<< Configuring library with pthread support >>>
<<< Found thread model: pthread >>>
<<< Laspack support is disabled, configure with --disable-strict-lgpl to enable it >>>
<<< The space filling curves partitioner is disabled, configure with --disable-strict-lgpl to enable it >>>
checking for zlib.h... yes
checking for gzopen in -lz... yes
<<< Configuring library with gzstreams support >>>
checking for bzip2... bzip2
checking for bunzip2... bunzip2
<<< Using bzip2/bunzip2 for writing/reading compressed .bz2 files >>>
checking for xz... xz
<<< Using xz for writing/reading compressed .xz files >>>
checking for X11/Intrinsic.h... no
<<< Using PETSc Metis support to avoid PETSc conflict>>>
<<< Configuring library with Metis support >>>
checking for thread local storage (TLS) class... thread_local
<<< Using PETSc ParMETIS support to avoid PETSc conflict>>>
<<< Configuring library with PETSc Parmetis support >>>
checking for doxygen... /usr/bin/doxygen
checking for dot... no
<<< Configuring library with poly2tri support >>>
-- The C compiler identification is GNU 9.4.0
-- The CXX compiler identification is GNU 9.4.0
-- Check for working C compiler: /usr/local/bin/mpicc
-- Check for working C compiler: /usr/local/bin/mpicc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/local/bin/mpicxx
-- Check for working CXX compiler: /usr/local/bin/mpicxx -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done
-- Generating done
-- Build files have been written to: /opt/moose/libmesh/build/contrib/netgen/build
<<< Configuring library with Netgen support >>>
<<< Tetgen support is disabled, configure with --disable-strict-lgpl to enable it >>>
<<< Triangle meshing support is disabled, configure with --disable-strict-lgpl to enable it >>>
checking for library containing sqrt... none required
checking for library containing trunc... none required
checking for library containing cos... none required
<<< Configuring library with Qhull version 2012.1 support >>>
<<< Configuring library with GMV support >>>
checking for vtkConfigure.h... no
checking for vtkVersionMacros.h... no
VTK header files not found!
<<< Configuring library without VTK support >>>
Testing EIGEN_INC=/usr/include
checking for Eigen/Eigen... no
<<< external Eigen header files not found, using Eigen from ./contrib >>>
checking for Eigen/Dense... yes
checking for Eigen/Sparse... yes
checking for eigen - version >= 3.1.2... yes
<<< Configuring library with Eigen support >>>
checking for glpk.h... no
GLPK header files not found!
<<< nlopt can only be enabled if libmesh is configured with --with-dof-id-bytes=4. >>>
<<< Required header files not found, Cap'n Proto support disabled. >>>
checking for hdf5.h... yes
checking for HDF5 version >= 1.8.0... yes
checking for H5Fopen in -lhdf5... yes
<<< Configuring library with HDF5 support >>>
checking for xml2-config... no
checking for libxml - version >= 2.0.0... no
*** The xml2-config script installed by LIBXML could not be found
*** If libxml was installed in PREFIX, make sure PREFIX/bin is in
*** your path, or set the XML2_CONFIG environment variable to the
*** full path to xml2-config.
<<< Configuring library with NetCDF version 4.6.2 support >>>
configure: Configuring NetCDF v4.6.2
distclean:
distdir:
<<< Configuring library with Exodus version v8.11 support >>>
<<< Configuring library with Nemesis version v8.11 support >>>
<<< Configuring library with libHilbert support >>>
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for bison... bison -y
<<< Configuring library with fparser support (release version) >>>
checking for dlopen support... (cached) yes
<<< Configuring library with fparser JIT compilation support >>>
checking for cppunit-config... none
checking whether we can build a trivial CppUnit program... no
<<< Configuring library with nanoflann KDtree support >>>
checking for MetaPhysicL NumberArray support... yes
<<< Configuring library with MetaPhysicL support >>>
<<< Configuring library with built-in MetaPhysicL support >>>
----------------------------------------------
--- Done configuring for optional packages ---
----------------------------------------------
removing duplicate include paths...
removing duplicate libraries...
checking for git... /usr/bin/git
checking that generated files are newer than configure... done
=== configuring in contrib/timpi (/opt/moose/libmesh/build/contrib/timpi)
configure: running /bin/bash ../../../contrib/timpi/configure '--prefix=/usr/local' --disable-option-checking  '--enable-silent-rules' '--enable-unique-id' '--disable-warnings' '--with-thread-model=openmp' '--disable-maintainer-mode' '--enable-hdf5' '--enable-petsc-hypre-required' '--enable-metaphysicl-required' '--enable-xdr-required' '--with-cxx-std-min=2014' '--without-gdb-command' '--with-methods=opt dbg' '--with-future-timpi-dir=/usr/local' 'INSTALL=/opt/moose/scripts/../libmesh/build-aux/install-sh -C' 'PETSC_DIR=/usr/local' 'CC=mpicc' 'CXX=mpicxx' 'METHODS=opt dbg' 'libmesh_CPPFLAGS=-D LIBMESH_HAVE_XDR' '--srcdir=../../../contrib/timpi' --cache-file=/dev/null
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /opt/moose/scripts/../libmesh/build-aux/install-sh -C
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '0' is supported by ustar format... yes
checking whether GID '0' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether make supports nested variables... (cached) yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for a sed that does not truncate output... /usr/bin/sed
checking Major version... 1
checking Minor version... 8
checking Point version... 5
note: MPI library path not given...
note: MPI library path not given...
checking whether make supports the include directive... yes (GNU style)
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether mpicxx accepts -g... yes
checking for mpicxx option to enable C++11 features... none needed
checking dependency style of mpicxx... gcc3
<<< C++ compiler is unknown but accepted gcc version >>>
configure: Seeking a C++ standard between "2014" and "2017"
checking whether mpicxx supports C++17 features by default... no
checking whether mpicxx supports C++17 features with -std=gnu++17... yes
configure: Found C++17 standard support
checking whether mpicxx -std=gnu++17 supports C++14 features by default... yes
configure: Found C++14 standard support
checking whether mpicxx -std=gnu++17 supports C++11 features by default... yes
configure: Found C++11 standard support
configure: Using support for C++17 standard
<<< C++ compiler is gcc-9.x >>>
checking for gcc... mpicc
checking whether the compiler supports GNU C... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to enable C11 features... none needed
checking whether mpicc understands -c and -o together... yes
checking dependency style of mpicc... gcc3
<<< Adding -ftrapping-math for FPE safety >>>
checking for gfortran... gfortran
checking whether the compiler supports GNU Fortran... yes
checking whether gfortran accepts -g... yes
<<< Configuring with methods "opt dbg" >>>
<<< Disabling extra paranoid compiler warnings >>>
<<< Compiler warnings are just warnings >>>
checking for stdio.h... no
checking for stdlib.h... no
checking for string.h... no
checking for inttypes.h... no
checking for stdint.h... no
checking for strings.h... no
checking for sys/stat.h... no
checking for sys/types.h... no
checking for unistd.h... no
note: Checking /lib and /include for MPI
note: Could not find /lib/libmpi(.a/.so/.dylib)
mpicxx -std=gnu++17 Compiler Supports MPI
---------------------------------------------
------- Configuring optional features -------
---------------------------------------------
<<< Configuring library with deprecated code support >>>
<<< Configuring library with exception throwing support >>>
<<< Default floating point is double precision (double) >>>
<<< Configuring library with compile timestamps >>>
>>> INFO: Disabling library warnings <<<
>>> Configuring library without warnings <<<
configuring size of processor_id... 4
---------------------------------------------
----- Done configuring optional features ----
---------------------------------------------
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by mpicc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from mpicc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if mpicc supports -fno-rtti -fno-exceptions... no
checking for mpicc option to produce PIC... -fPIC -DPIC
checking if mpicc PIC flag -fPIC -DPIC works... yes
checking if mpicc static flag -static works... yes
checking if mpicc supports -c -o file.o... yes
checking if mpicc supports -c -o file.o... (cached) yes
checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... mpicxx -std=gnu++17 -E
checking for ld used by mpicxx -std=gnu++17... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the mpicxx -std=gnu++17 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for mpicxx -std=gnu++17 option to produce PIC... -fPIC -DPIC
checking if mpicxx -std=gnu++17 PIC flag -fPIC -DPIC works... yes
checking if mpicxx -std=gnu++17 static flag -static works... yes
checking if mpicxx -std=gnu++17 supports -c -o file.o... yes
checking if mpicxx -std=gnu++17 supports -c -o file.o... (cached) yes
checking whether the mpicxx -std=gnu++17 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for git... /usr/bin/git
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating src/utilities/include/timpi/timpi_version.h
config.status: creating Makefile
config.status: creating timpi.pc
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating bin/timpi-config
config.status: creating test/run_unit_tests.sh
config.status: creating src/utilities/include/timpi/timpi_config.h.tmp
config.status: executing src/utilities/include/timpi/timpi_config.h commands
config.status: creating src/utilities/include/timpi/timpi_config.h - prefix TIMPI for src/utilities/include/timpi/timpi_config.h.tmp defines
config.status: executing depfiles commands
config.status: executing libtool commands

----------------------------------- SUMMARY -----------------------------------

Package version............... : timpi-1.8.5

C++ compiler.................. : mpicxx -std=gnu++17
Build Methods...................... : opt dbg
CPPFLAGS...(opt)................... : -DNDEBUG  -I/usr/include/
CXXFLAGS...(opt)................... :  -O2 -felide-constructors -fstrict-aliasing -Wdisabled-optimization -funroll-loops -ftrapping-math

CPPFLAGS...(dbg)................... : -DDEBUG  -I/usr/include/
CXXFLAGS...(dbg)................... :  -O0 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Woverloaded-virtual -ftrapping-math

Any warnings-to-errors flags.. :
Any paranoid warning flags.... :
Install dir................... : /usr/local
Build user.................... :
Build host.................... : buildkitsandbox
Configure date................ : 2025-09-09 07:59
Build architecture............ : x86_64-pc-linux-gnu
Git revision number........... : ba3fbdeaedac7cc2151517b0b6357782322cc760

-------------------------------------------------------------------------------
Optional Packages for Testing:
  MPI......................... : yes
  MPI_IMPL.................... : CXX-built-in

Configure complete, now type \'make\' and then \'make install\'.

=== configuring in contrib/netcdf/netcdf-c-4.6.2 (/opt/moose/libmesh/build/contrib/netcdf/netcdf-c-4.6.2)
configure: running /bin/bash ../../../../contrib/netcdf/netcdf-c-4.6.2/configure '--prefix=/usr/local' --disable-option-checking  '--enable-silent-rules' '--enable-unique-id' '--disable-warnings' '--with-thread-model=openmp' '--disable-maintainer-mode' '--enable-hdf5' '--enable-petsc-hypre-required' '--enable-metaphysicl-required' '--enable-xdr-required' '--with-cxx-std-min=2014' '--without-gdb-command' '--with-methods=opt dbg' '--with-future-timpi-dir=/usr/local' 'INSTALL=/opt/moose/scripts/../libmesh/build-aux/install-sh -C' 'PETSC_DIR=/usr/local' 'CC=mpicc' 'CXX=mpicxx' 'METHODS=opt dbg' 'libmesh_CPPFLAGS=-D LIBMESH_HAVE_XDR' 'CXX=mpicxx -std=gnu++17' 'CC=mpicc' 'F77=mpif90' 'FC=mpif90' 'CPPFLAGS=-I/usr/local/include -I/usr/local//include -I/usr/local/include -I/usr/local/include  ' 'LIBS=-Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lpetsc -lHYPRE -ldmumps -lmumps_common -lpord -lpthread -lstrumpack -lscalapack -lsuperlu_dist -lkokkoskernels -lkokkoscontainers -lkokkoscore -lkokkossimd -lflapack -lfblas -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lpthread -lparmetis -lmetis -lhdf5_hl -lhdf5 -lm -lceed -lX11 -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -lrt -ldl -L/lib -lhdf5 -Wl,-rpath,/lib -ldl  ' '--disable-libxml2' '--disable-dap' '--disable-curl' '--disable-byterange' '--disable-testsets' '' '--srcdir=../../../../contrib/netcdf/netcdf-c-4.6.2' --cache-file=/dev/null
configure: netCDF 4.6.2
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /opt/moose/scripts/../libmesh/build-aux/install-sh -C
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking whether to enable maintainer-specific portions of Makefiles... no
configure: checking user options
checking whether a NCIO_MINBLOCKSIZE was specified... 256
checking for valgrind... no
checking if fsync support is enabled... no
checking if jna bug workaround is enabled... no
checking whether we should build netCDF-4... yes
checking do we require hdf5 dynamic-loading support... yes
checking whether reading of HDF4 SD files is to be enabled... no
checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)... no
checking whether we should attempt to install netcdf-fortran (EXPERIMENTAL)... no
checking whether extra example tests should be run... no
checking whether parallel IO tests should be run... no
checking whether a user specified program to run mpi programs... mpiexec
checking whether a default chunk size in bytes was specified... 4194304
checking whether a maximum per-variable cache size for HDF5 was specified... 67108864
checking whether a number of chunks for the default per-variable cache was specified... 10
checking whether a default file cache size for HDF5 was specified... 4194304
checking whether a default file cache maximum number of elements for HDF5 was specified... 1009
checking whether a default cache preemption for HDF5 was specified... 0.75
checking whether netCDF-4 logging is enabled... no
checking whether nc_set_log_level() function is included (will do nothing unless enable-logging is also used)... yes
checking whether DAP client(s) are to be built... no
checking for gcc... mpicc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to enable C11 features... none needed
checking whether mpicc understands -c and -o together... yes
checking for curl_easy_setopt in -lcurl... yes
checking whether dap remote testing should be enabled (default off)... no
checking whether dap remote authorization testing should be enabled (default off)... no
checking whether netcdf4 group names for DAP2 should be enabled (default on)... yes
configure: DAP2 groups is being disabled because DAP2 support is  disabled or netcdf-4 disabled
checking which remote test server(s) to use... 149.165.169.123:8080,remotetest.unidata.ucar.edu
checking whether the time-consuming dap tests should be enabled (default off)... no
checking whether to enable strict null-byte header padding when reading (default off)... no
checking whether FFIO will be used... no
checking whether STDIO will be used... no
checking whether examples should be built... yes
checking whether v2 netCDF API should be built... yes
checking whether the ncgen/ncdump/nccopy should be built... yes
checking whether test should be built and run... no
checking whether large file (> 2GB) tests should be run... no
checking whether benchmarks should be run (experimental)... no
checking whether extreme numbers should be used in tests... yes
checking where to put large temp files if large file tests are run... .
checking Extra values for _NCProperties...
checking whether user-defined format 0 was specified...
checking whether a magic number for user-defined format 0 was specified...
checking whether user-defined format 1 was specified...
checking whether a magic number for user-defined format 1 was specified...
checking whether a default cache preemption for HDF5 was specified... 0.75
configure: finding C compiler
checking for gcc... (cached) mpicc
checking whether the compiler supports GNU C... (cached) yes
checking whether mpicc accepts -g... (cached) yes
checking for mpicc option to enable C11 features... (cached) none needed
checking whether mpicc understands -c and -o together... (cached) yes
checking for an ANSI C-conforming const... yes
checking whether CURLOPT_USERNAME is defined... yes
checking whether CURLOPT_PASSWORD is defined... yes
checking whether CURLOPT_KEYPASSWD is defined... yes
checking whether CURLINFO_RESPONSE_CODE is defined... yes
checking whether CURLOPT_BUFFERSIZE is defined... yes
checking whether CURLOPT_TCP_KEEPALIVE is defined... yes
configure: setting up libtool
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by mpicc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from mpicc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if mpicc supports -fno-rtti -fno-exceptions... no
checking for mpicc option to produce PIC... -fPIC -DPIC
checking if mpicc PIC flag -fPIC -DPIC works... yes
checking if mpicc static flag -static works... no
checking if mpicc supports -c -o file.o... yes
checking if mpicc supports -c -o file.o... (cached) yes
checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
configure: finding other utilities
checking for m4... m4
checking for doxygen... doxygen
checking for dot... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
configure: displaying some results
checking CPPFLAGS... -I/usr/local/include -I/usr/local//include -I/usr/local/include -I/usr/local/include
checking CC CFLAGS... mpicc
checking type mpicc... mpicc is /usr/local/bin/mpicc
checking CXX... mpicxx -std=gnu++17
checking CXXFLAGS...
checking type mpicxx -std=gnu++17... mpicxx is /usr/local/bin/mpicxx
checking FC... mpif90
checking FFLAGS...
checking type mpif90... mpif90 is /usr/local/bin/mpif90
checking F90... unset
checking AR... ar
checking AR_FLAGS... cr
checking type ar... ar is /usr/bin/ar
checking NM... /usr/bin/nm -B
checking NMFLAGS...
configure: checking types, headers, and functions
checking for sys/param.h... yes
checking for libgen.h... yes
checking for egrep... (cached) /usr/bin/grep -E
checking for locale.h... yes
checking for stdio.h... (cached) yes
checking for stdarg.h... yes
checking for fcntl.h... yes
checking for malloc.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for getopt.h... yes
checking for sys/time.h... yes
checking for sys/types.h... (cached) yes
checking for sys/resource.h... yes
checking for ftw.h... yes
checking for strlcat... no
checking for snprintf... yes
checking for strdup... yes
checking for strtoll... yes
checking for strtoull... yes
checking for mkstemp... yes
checking for mktemp... yes
checking for random... yes
checking for getrlimit... yes
checking for gettimeofday... yes
checking for fsync... yes
checking for MPI_Comm_f2c... no
checking for MPI_Info_f2c... no
checking for memmove... yes
checking for getpagesize... yes
checking for sysconf... yes
checking whether mmap is enabled for in-memory files... no
checking for mmap... yes
checking for mremap... yes
checking for size_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for mpicc options needed to detect all undeclared functions... none needed
checking whether isnan is declared... yes
checking whether isinf is declared... yes
checking whether isfinite is declared... yes
checking for struct stat.st_blksize... yes
checking for IEEE floating point format... yes
checking for size_t... (cached) yes
checking for ssize_t... yes
checking for schar... no
checking for uchar... no
checking for longlong... no
checking for ushort... yes
checking for uint... yes
checking for int64... no
checking for uint64... no
checking for off_t... yes
checking for uintptr_t... yes
checking whether char is unsigned... no
checking whether byte ordering is bigendian... no
checking size of short... 2
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of float... 4
checking size of double... 8
checking size of off_t... 8
checking size of size_t... 8
checking size of unsigned long long... 8
checking whether CDF5 support should be disabled... yes
checking size of unsigned char... 1
checking size of ushort... 2
checking size of uint... 4
checking size of ushort... (cached) 2
checking size of uint... (cached) 4
checking size of ssize_t... 8
checking size of void*... 8
checking for library containing deflate... -lz
checking for library containing SZ_Compress... no
checking for library containing dlopen... none required
checking for floor in -lm... yes
checking for library containing H5Fflush... none required
checking for library containing H5DSis_scale... none required
checking for hdf5.h... yes
checking for H5Z_SZIP... no
checking for H5Pget_fapl_mpio... yes
checking for H5Pset_deflate... yes
checking for H5Z_SZIP... (cached) no
checking for H5free_memory... yes
checking for H5Pset_libver_bounds... yes
checking for H5Pset_all_coll_metadata_ops... yes
checking whether parallel io is enabled in hdf5... yes
checking whether szlib was used when building HDF5... no
checking whether parallel I/O is enabled for netcdf-4... yes
checking whether parallel I/O for classic files is to be enabled... no
checking for unsigned long long int... yes
checking for long long int... yes
checking for unsigned long long int... (cached) yes
checking what to call the output of the ftpbin target... binary-netcdf-4.6.2.tar mpif90 mpicxx -std=gnu++17
checking if libtool needs -no-undefined flag to build shared libraries... no
checking value of LIBS... -lm -lz -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lpetsc -lHYPRE -ldmumps -lmumps_common -lpord -lpthread -lstrumpack -lscalapack -lsuperlu_dist -lkokkoskernels -lkokkoscontainers -lkokkoscore -lkokkossimd -lflapack -lfblas -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lpthread -lparmetis -lmetis -lhdf5_hl -lhdf5 -lm -lceed -lX11 -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -lrt -ldl -L/lib -lhdf5 -Wl,-rpath,/lib -ldl
checking If compilation is for use with JNA... no
checking whether large metadata performance testing should be run... no
checking whether filter testing should be run... yes
configure: generating header files and makefiles
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating test_common.sh
config.status: creating nc_test4/findplugin.sh
config.status: creating examples/C/findplugin.sh
config.status: creating ncdap_test/findtestserver.c
config.status: creating dap4_test/findtestserver4.c
config.status: creating nc_test4/run_par_test.sh
config.status: creating nc_test4/run_par_bm_test.sh
config.status: creating nc-config
config.status: creating Makefile
config.status: creating netcdf.pc
config.status: creating libnetcdf.settings
config.status: creating postinstall.sh
config.status: creating include/netcdf_meta.h
config.status: creating include/Makefile
config.status: creating h5_test/Makefile
config.status: creating hdf4_test/Makefile
config.status: creating libsrc/Makefile
config.status: creating libsrc4/Makefile
config.status: creating libhdf5/Makefile
config.status: creating libsrcp/Makefile
config.status: creating ncdump/Makefile
config.status: creating ncgen3/Makefile
config.status: creating ncgen/Makefile
config.status: creating examples/Makefile
config.status: creating examples/C/Makefile
config.status: creating examples/CDL/Makefile
config.status: creating oc2/Makefile
config.status: creating libdap2/Makefile
config.status: creating libdap4/Makefile
config.status: creating libhdf4/Makefile
config.status: creating libdispatch/Makefile
config.status: creating liblib/Makefile
config.status: creating ncdump/cdl/Makefile
config.status: creating ncdump/expected/Makefile
config.status: creating docs/Makefile
config.status: creating docs/images/Makefile
config.status: creating nctest/Makefile
config.status: creating nc_test4/Makefile
config.status: creating nc_test/Makefile
config.status: creating ncdap_test/Makefile
config.status: creating ncdap_test/testdata3/Makefile
config.status: creating ncdap_test/expected3/Makefile
config.status: creating ncdap_test/expectremote3/Makefile
config.status: creating dap4_test/Makefile
config.status: creating plugins/Makefile
config.status: creating config.h
config.status: linking ../../../../contrib/netcdf/netcdf-c-4.6.2/nc_test4/ref_hdf5_compat1.nc to nc_test4/ref_hdf5_compat1.nc
config.status: linking ../../../../contrib/netcdf/netcdf-c-4.6.2/nc_test4/ref_hdf5_compat2.nc to nc_test4/ref_hdf5_compat2.nc
config.status: linking ../../../../contrib/netcdf/netcdf-c-4.6.2/nc_test4/ref_hdf5_compat3.nc to nc_test4/ref_hdf5_compat3.nc
config.status: linking ../../../../contrib/netcdf/netcdf-c-4.6.2/hdf4_test/ref_chunked.hdf4 to hdf4_test/ref_chunked.hdf4
config.status: linking ../../../../contrib/netcdf/netcdf-c-4.6.2/hdf4_test/ref_contiguous.hdf4 to hdf4_test/ref_contiguous.hdf4
config.status: executing libtool commands
# NetCDF C Configuration Summary
==============================

# General
-------
NetCDF Version:		4.6.2
Configured On:		Tue Sep  9 07:59:28 UTC 2025
Host System:		x86_64-pc-linux-gnu
Build Directory: 	/opt/moose/libmesh/build/contrib/netcdf/netcdf-c-4.6.2
Install Prefix:         /usr/local

# Compiling Options
-----------------
C Compiler:		/usr/local/bin/mpicc
CFLAGS:
CPPFLAGS:		-I/usr/local/include -I/usr/local//include -I/usr/local/include -I/usr/local/include
LDFLAGS:
AM_CFLAGS:
AM_CPPFLAGS:
AM_LDFLAGS:
Shared Library:		yes
Static Library:		yes
Extra libraries:	-lm -lz -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lpetsc -lHYPRE -ldmumps -lmumps_common -lpord -lpthread -lstrumpack -lscalapack -lsuperlu_dist -lkokkoskernels -lkokkoscontainers -lkokkoscore -lkokkossimd -lflapack -lfblas -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lpthread -lparmetis -lmetis -lhdf5_hl -lhdf5 -lm -lceed -lX11 -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -lrt -ldl -L/lib -lhdf5 -Wl,-rpath,/lib -ldl

# Features
--------
NetCDF-2 API:		yes
HDF4 Support:		no
NetCDF-4 API:		yes
NC-4 Parallel Support:	yes
PnetCDF Support:	no
DAP2 Support:		no
DAP4 Support:		no
Diskless Support:	yes
MMap Support:		no
JNA Support:		no
CDF5 Support:		yes
ERANGE Fill Support:	no
Relaxed Boundary Check:	yes
=== configuring in contrib/metaphysicl (/opt/moose/libmesh/build/contrib/metaphysicl)
configure: running /bin/bash ../../../contrib/metaphysicl/configure '--prefix=/usr/local' --disable-option-checking  '--enable-silent-rules' '--enable-unique-id' '--disable-warnings' '--with-thread-model=openmp' '--disable-maintainer-mode' '--enable-hdf5' '--enable-petsc-hypre-required' '--enable-metaphysicl-required' '--enable-xdr-required' '--with-cxx-std-min=2014' '--without-gdb-command' '--with-methods=opt dbg' '--with-future-timpi-dir=/usr/local' 'INSTALL=/opt/moose/scripts/../libmesh/build-aux/install-sh -C' 'PETSC_DIR=/usr/local' 'CC=mpicc' 'CXX=mpicxx' 'METHODS=opt dbg' 'libmesh_CPPFLAGS=-D LIBMESH_HAVE_XDR' '--with-cxx-std=2017' 'CPPFLAGS=-I/opt/moose/libmesh/contrib/timpi/src/algorithms/include/ -I/opt/moose/libmesh/contrib/timpi/src/parallel/include/ -I/opt/moose/libmesh/contrib/timpi/src/utilities/include/ -I/opt/moose/libmesh/build/contrib/timpi/src/utilities/include/ ' 'LDFLAGS=-L/opt/moose/libmesh/build/contrib/timpi/src/ ' '--with-future-timpi-dir=/usr/local' '--with-timpi-method=opt' '--srcdir=../../../contrib/metaphysicl' --cache-file=/dev/null
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /opt/moose/scripts/../libmesh/build-aux/install-sh -C
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '0' is supported by ustar format... yes
checking whether GID '0' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether make supports nested variables... (cached) yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for a sed that does not truncate output... /usr/bin/sed
checking Major version... 1
checking Minor version... 4
checking Point version... 0
note: MPI library path not given...
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checking for gcc... mpicc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to enable C11 features... none needed
checking whether mpicc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of mpicc... gcc3
checking whether the compiler supports GNU C++... yes
checking whether mpicxx accepts -g... yes
checking for mpicxx option to enable C++11 features... none needed
checking dependency style of mpicxx... gcc3
checking for gfortran... gfortran
checking whether the compiler supports GNU Fortran... yes
checking whether gfortran accepts -g... yes
configure: Seeking a C++ standard between "2017" and "2017"
checking whether mpicxx supports C++17 features by default... no
checking whether mpicxx supports C++17 features with -std=gnu++17... yes
configure: Found C++17 standard support
checking whether mpicxx -std=gnu++17 supports C++14 features by default... yes
configure: Found C++14 standard support
checking whether mpicxx -std=gnu++17 supports C++11 features by default... yes
configure: Found C++11 standard support
configure: Using support for C++17 standard
<<< C++ compiler is gcc-9.x >>>
<<< Adding -ftrapping-math for FPE safety >>>
checking CXXFLAGS for maximum warnings... -Wall
<<< Disabling extra paranoid compiler warnings >>>
<<< Compiler warnings are just warnings >>>
checking how to print strings... printf
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checking for ld used by mpicc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
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checking command to parse /usr/bin/nm -B output from mpicc object... ok
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checking dynamic linker characteristics... GNU/Linux ld.so
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checking how to run the C++ preprocessor... mpicxx -std=gnu++17 -E
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checking for mpicxx -std=gnu++17 option to produce PIC... -fPIC -DPIC
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checking how to hardcode library paths into programs... immediate
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checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
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configure: optional MASA library not found
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checking for the pthreads library -llthread... no
checking whether pthreads work with -pthread... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for Boost headers version >= 1.47.0... yes
checking for Boost's header version... 1_71
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checking for the Boost chrono library... (cached) yes
checking for boost/date_time/posix_time/posix_time.hpp... yes
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configure: optional VEXCL library not found
note: Checking /lib and /include for MPI
note: Could not find /lib/libmpi(.a/.so/.dylib)
mpicxx -std=gnu++17 Compiler Supports MPI
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checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating doxygen/txt_common/about_vpath.page
config.status: creating src/utilities/include/metaphysicl/metaphysicl_version.h
config.status: creating doxygen/Makefile
config.status: creating doxygen/metaphysicl.dox
config.status: creating Makefile
config.status: creating metaphysicl.pc
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating test/run_unit_tests.sh
config.status: creating src/utilities/include/metaphysicl/metaphysicl_config.h.tmp
config.status: executing src/utilities/include/metaphysicl/metaphysicl_config.h commands
config.status: creating src/utilities/include/metaphysicl/metaphysicl_config.h - prefix METAPHYSICL for src/utilities/include/metaphysicl/metaphysicl_config.h.tmp defines
config.status: executing depfiles commands
config.status: executing libtool commands
checking for git... (cached) /usr/bin/git

----------------------------------- SUMMARY -----------------------------------

Package version............... : metaphysicl-1.4.0

C++ compiler.................. : mpicxx -std=gnu++17
C++ compiler flags............ : -O2 -felide-constructors -fstrict-aliasing -Wdisabled-optimization -funroll-loops -ftrapping-math
Any warnings-to-errors flags....... :
Any extra paranoid warning flags... :
Install dir................... : /usr/local
Build user.................... :
Build host.................... : buildkitsandbox
Configure date................ : 2025-09-09 08:00
Build architecture............ : x86_64-pc-linux-gnu
Git revision number........... : external

Optional Packages for Testing:
  MASA........................ : no
  VEXCL....................... : no
  TIMPI....................... : yes
  TIMPI_CPPFLAGS.............. :
  TIMPI_LIB................... : yes
  TIMPI_LIBS.................. : -ltimpi_opt

-------------------------------------------------------------------------------

Configure complete, now type 'make' and then 'make install'.

configure: creating ./config.status
config.status: creating Makefile
config.status: creating include/Makefile
config.status: creating include/libmesh/Makefile
config.status: creating contrib/Makefile
config.status: creating contrib/utils/Makefile
config.status: creating contrib/utils/Make.common
config.status: creating tests/Makefile
config.status: creating contrib/utils/libmesh-opt.pc
config.status: creating contrib/utils/libmesh-dbg.pc
config.status: creating contrib/utils/libmesh-devel.pc
config.status: creating contrib/utils/libmesh-prof.pc
config.status: creating contrib/utils/libmesh-oprof.pc
config.status: creating doc/Doxyfile
config.status: creating doc/Makefile
config.status: creating doc/html/Makefile
config.status: creating contrib/bin/libmesh-config
config.status: creating contrib/bin/create_libmesh_release
config.status: creating doc/dot
config.status: creating tests/run_unit_tests.sh
config.status: creating contrib/utils/libmesh.pc
config.status: creating contrib/boost/include/Makefile
config.status: creating contrib/laspack/Makefile
config.status: creating contrib/sfcurves/Makefile
config.status: creating contrib/gzstream/Makefile
config.status: creating contrib/tecplot/tecio/Makefile
config.status: creating contrib/tecplot/binary/Makefile
config.status: creating contrib/metis/Makefile
config.status: creating contrib/parmetis/Makefile
config.status: creating contrib/poly2tri/modified/Makefile
config.status: creating contrib/netgen/Makefile
config.status: creating contrib/tetgen/Makefile
config.status: creating contrib/triangle/Makefile
config.status: creating contrib/qhull/qhull/Makefile
config.status: creating contrib/gmv/Makefile
config.status: creating contrib/eigen/eigen/Makefile
config.status: creating contrib/capnproto/Makefile
config.status: creating contrib/exodusii/v5.09/Makefile
config.status: creating contrib/exodusii/v5.22/exodus/Makefile
config.status: creating contrib/exodusii/v8.11/exodus/Makefile
config.status: creating contrib/nemesis/v3.09/Makefile
config.status: creating contrib/nemesis/v5.22/nemesis/Makefile
config.status: creating contrib/nemesis/v8.11/nemesis/Makefile
config.status: creating contrib/libHilbert/Makefile
config.status: creating contrib/fparser/Makefile
config.status: creating contrib/fparser/extrasrc/Makefile
config.status: creating contrib/nanoflann/Makefile
config.status: creating examples/introduction/introduction_ex1/Makefile
config.status: creating examples/introduction/introduction_ex2/Makefile
config.status: creating examples/introduction/introduction_ex3/Makefile
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config.status: creating examples/adaptivity/adaptivity_ex1/Makefile
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config.status: creating examples/Makefile
config.status: creating include/libmesh_config.h.tmp
config.status: executing include/libmesh_config.h commands
config.status: creating include/libmesh_config.h - prefix LIBMESH for include/libmesh_config.h.tmp defines
config.status: executing depfiles commands
config.status: executing libtool commands

----------------------------------- SUMMARY -----------------------------------

Package version.................... : libmesh-1.9.0-pre

C++ compiler type.................. : gcc9
C++ compiler....................... : mpicxx -std=gnu++17
C compiler......................... : mpicc
Fortran compiler................... : mpif90
Build Methods...................... : opt dbg

CPPFLAGS...(opt)................... : -DNDEBUG -D LIBMESH_HAVE_XDR
CXXFLAGS...(opt)................... :  -O2 -felide-constructors -fstrict-aliasing -Wdisabled-optimization -funroll-loops -ftrapping-math    -fopenmp
CFLAGS.....(opt)................... : -O2 -fstrict-aliasing -funroll-loops -ftrapping-math    -fopenmp

CPPFLAGS...(dbg)................... : -DDEBUG -D LIBMESH_HAVE_XDR
CXXFLAGS...(dbg)................... :  -O0 -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Woverloaded-virtual -ftrapping-math    -fopenmp
CFLAGS.....(dbg)................... : -O0 -g -Wimplicit -ftrapping-math    -fopenmp

Any warnings-to-errors flags....... :
Any extra paranoid warning flags... :
Install dir........................ : /usr/local
Build user......................... :
Build host......................... : buildkitsandbox
Build architecture................. : x86_64-pc-linux-gnu
Git revision....................... : 6ef7d4395794104f48dae1fd48e64077207188e8

Library Features:
  library warnings................. : no
  library deprecated code support.. : yes
  adaptive mesh refinement......... : yes
  blocked matrix/vector storage.... : no
  complex variables................ : no
  example suite.................... : yes
  ghosted vectors.................. : yes
  high-order shape functions....... : yes
  unique-id support................ : yes
  id size (boundaries)............. : 2 bytes
  id size (dofs)................... : 8 bytes
  id size (unique)................. : 8 bytes
  id size (processors)............. : 4 bytes
  id size (subdomains)............. : 2 bytes
  infinite elements................ : no
  Dirichlet constraints............ : yes
  node constraints................. : no
  parallel mesh.................... : no
  performance logging.............. : no
  periodic boundary conditions..... : yes
  real number type................. : double
  reference counting............... : yes
  shape function 2nd derivatives... : yes
  stack trace files................ : no
  track node valence............... : yes
  variational smoother............. : yes
  xdr binary I/O................... : yes

Optional Packages:
  boost............................ : yes
  capnproto........................ : no
  cppunit.......................... : no
  curl............................. : no
  eigen............................ : yes
  exodus........................... : yes
     version....................... : v8.11
  fparser.......................... : yes
     build from version............ : release
  glpk............................. : no
  gmv.............................. : yes
  gzstream......................... : yes
  hdf5............................. : yes
  laspack.......................... : no
  libhilbert....................... : yes
  metaphysicl...................... : yes
  metis............................ : yes
  mpi.............................. : yes
  nanoflann........................ : yes
  nemesis.......................... : yes
     version....................... : v8.11
  netcdf........................... : yes
     version....................... : v4.6.2
  netgen........................... : yes
  nlopt............................ : no
  parmetis......................... : yes
  petsc............................ : yes
     version....................... : 3.21.4
  poly2tri......................... : yes
  qhull............................ : yes
  sfcurves......................... : no
  slepc............................ : yes
     version....................... : 3.21.1
  thread model..................... : pthread
  c++ rtti ........................ : yes
  tecio............................ : no
  tecplot...(vendor binaries)...... : no
  tetgen........................... : no
  triangle......................... : no
  trilinos......................... : no
  vtk.............................. : no

  libmesh_contrib_INCLUDES......... : -I$(top_srcdir)/contrib/metaphysicl/src/numerics/include -I$(top_srcdir)/contrib/metaphysicl/src/core/include -I$(top_srcdir)/contrib/metaphysicl/src/utilities/include -I$(top_srcdir)/contrib/nanoflann/nanoflann/include -I$(top_srcdir)/contrib/fparser -I$(top_srcdir)/contrib/libHilbert/include -I$(top_srcdir)/contrib/nemesis/v8.11/nemesis -I$(top_srcdir)/contrib/exodusii/v8.11/exodus/include -I$(top_srcdir)/contrib/exodusii/v8.11/exodus/sierra -I$(top_srcdir)/contrib/netcdf/netcdf-c-4.6.2/include -I$(top_builddir)/contrib/netcdf/netcdf-c-4.6.2/include -I$(top_srcdir)/contrib/eigen/eigen -I$(top_srcdir)/contrib/gmv -I$(top_srcdir)/contrib/qhull/qhull/src -I$(top_srcdir)/contrib/qhull/qhull/src/libqhullcpp -I$(top_srcdir)/contrib/netgen/ -I$(top_builddir)/contrib/netgen/build/ -I$(top_builddir)/contrib/poly2tri/modified   -I$(top_srcdir)/contrib/gzstream -I$(top_builddir)/contrib/timpi/src/utilities/include -I$(top_srcdir)/contrib/timpi/src/utilities/include -I$(top_srcdir)/contrib/timpi/src/parallel/include -I$(top_srcdir)/contrib/timpi/src/algorithms/include

  libmesh_optional_INCLUDES........ : -pthread -I/usr/local/include -I/usr/local//include -I/usr/include

  libmesh_optional_LIBS............ : -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lnglib -lngcore -lz -lslepc -lpetsc -lHYPRE -ldmumps -lmumps_common -lpord -lstrumpack -lscalapack -lsuperlu_dist -lkokkoskernels -lkokkoscontainers -lkokkoscore -lkokkossimd -lflapack -lfblas -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lpthread -lparmetis -lmetis -lhdf5_hl -lhdf5 -lceed -lX11 -lmpifort -lmpi -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -lrt -ldl


-------------------------------------------------------------------------------
Configure complete, now type 'make' and then 'make install'.

---------------------------------------------
--------- Done Configuring libMesh ----------
---------------------------------------------

---

Compile error logs

Compiling C++ (in opt mode) /opt/moose/framework/build/unity_src/nodalkernels_Unity.C...
Compiling C++ (in opt mode) /opt/moose/framework/build/unity_src/constraints_Unity.C...
Compiling C++ (in opt mode) /opt/moose/framework/build/unity_src/bounds_Unity.C...
Compiling C++ (in opt mode) /opt/moose/framework/build/unity_src/dampers_Unity.C...
Compiling C++ (in opt mode) /opt/moose/framework/build/unity_src/distributions_Unity.C...
Compiling C++ (in opt mode) /opt/moose/framework/build/unity_src/restart_Unity.C...
Compiling C++ (in opt mode) /opt/moose/framework/build/unity_src/timeintegrators_Unity.C...
Compiling C++ (in opt mode) /opt/moose/framework/build/unity_src/auxkernels_Unity.C...
In file included from /opt/moose/framework/build/header_symlinks/TaggingInterface.h:15,
                 from /opt/moose/framework/build/header_symlinks/ResidualObject.h:22,
                 from /opt/moose/framework/build/header_symlinks/NodalKernelBase.h:13,
                 from /opt/moose/framework/build/header_symlinks/ADNodalKernel.h:12,
                 from /opt/moose/framework/src/nodalkernels/ADNodalKernel.C:10,
                 from /opt/moose/framework/build/unity_src/nodalkernels_Unity.C:2:
/opt/moose/framework/build/header_symlinks/Assembly.h: In instantiation of 'void Assembly::cacheJacobian(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]':
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:520:3:   required from 'void TaggingInterface::addJacobian(Assembly&, const Residuals&, const Indices&, libMesh::Real) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:610:84:   required from here
/opt/moose/framework/build/header_symlinks/Assembly.h:3094:40: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'int')
 3094 |   const auto & compare_dofs = residuals[0].derivatives().nude_indices();
      |                               ~~~~~~~~~^
/opt/moose/framework/build/header_symlinks/Assembly.h:3123:48: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'const long unsigned int')
 3123 |     const auto & sparse_derivatives = residuals[i].derivatives();
      |                                       ~~~~~~~~~^
/opt/moose/framework/build/header_symlinks/Assembly.h: In instantiation of 'void Assembly::cacheJacobianWithoutConstraints(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]':
/opt/moose/framework/build/header_symlinks/Assembly.h:3089:5:   required from 'void Assembly::cacheJacobian(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:520:3:   required from 'void TaggingInterface::addJacobian(Assembly&, const Residuals&, const Indices&, libMesh::Real) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:610:84:   required from here
/opt/moose/framework/build/header_symlinks/Assembly.h:3155:48: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'const long unsigned int')
 3155 |     const auto & sparse_derivatives = residuals[i].derivatives();
      |                                       ~~~~~~~~~^
In file included from /opt/moose/framework/src/dampers/ElementDamper.C:13,
                 from /opt/moose/framework/build/unity_src/dampers_Unity.C:6:
/opt/moose/framework/build/header_symlinks/Assembly.h: In instantiation of 'void Assembly::cacheJacobian(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]':
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:520:3:   required from 'void TaggingInterface::addJacobian(Assembly&, const Residuals&, const Indices&, libMesh::Real) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:610:84:   required from here
/opt/moose/framework/build/header_symlinks/Assembly.h:3094:40: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'int')
 3094 |   const auto & compare_dofs = residuals[0].derivatives().nude_indices();
      |                               ~~~~~~~~~^
/opt/moose/framework/build/header_symlinks/Assembly.h:3123:48: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'const long unsigned int')
 3123 |     const auto & sparse_derivatives = residuals[i].derivatives();
      |                                       ~~~~~~~~~^
In file included from /opt/moose/framework/build/header_symlinks/TaggingInterface.h:15,
                 from /opt/moose/framework/build/header_symlinks/ResidualObject.h:22,
                 from /opt/moose/framework/build/header_symlinks/MooseObjectWarehouse.h:16,
                 from /opt/moose/framework/build/header_symlinks/ExecuteMooseObjectWarehouse.h:13,
                 from /opt/moose/framework/build/header_symlinks/FEProblemBase.h:26,
                 from /opt/moose/framework/src/distributions/DistributionInterface.C:14,
                 from /opt/moose/framework/build/unity_src/distributions_Unity.C:3:
/opt/moose/framework/build/header_symlinks/Assembly.h: In instantiation of 'void Assembly::cacheJacobian(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]':
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:520:3:   required from 'void TaggingInterface::addJacobian(Assembly&, const Residuals&, const Indices&, libMesh::Real) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:610:84:   required from here
/opt/moose/framework/build/header_symlinks/Assembly.h:3094:40: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'int')
 3094 |   const auto & compare_dofs = residuals[0].derivatives().nude_indices();
      |                               ~~~~~~~~~^
/opt/moose/framework/build/header_symlinks/Assembly.h:3123:48: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'const long unsigned int')
 3123 |     const auto & sparse_derivatives = residuals[i].derivatives();
      |                                       ~~~~~~~~~^
In file included from /opt/moose/framework/build/unity_src/constraints_Unity.C:7:
/opt/moose/framework/src/constraints/AutomaticMortarGeneration.C: In member function 'void AutomaticMortarGeneration::buildMortarSegmentMesh()':
/opt/moose/framework/src/constraints/AutomaticMortarGeneration.C:498:41: error: no matching function for call to 'libMesh::Elem::set_node(std::remove_const<unsigned int>::type&, libMesh::Node*&)'
  498 |       new_elem->set_node(n, new_nodes[n]);
      |                                         ^
In file included from /usr/local/include/libmesh/remote_elem.h:24,
                 from /opt/moose/framework/build/header_symlinks/libMeshReducedNamespace.h:17,
                 from /opt/moose/framework/build/header_symlinks/Moose.h:12,
                 from /opt/moose/framework/build/header_symlinks/MooseTypes.h:12,
                 from /opt/moose/framework/build/header_symlinks/MooseUtils.h:13,
                 from /opt/moose/framework/build/header_symlinks/MooseObject.h:13,
                 from /opt/moose/framework/build/header_symlinks/ResidualObject.h:12,
                 from /opt/moose/framework/build/header_symlinks/NeighborResidualObject.h:12,
                 from /opt/moose/framework/build/header_symlinks/Constraint.h:13,
                 from /opt/moose/framework/build/header_symlinks/MortarConstraintBase.h:13,
                 from /opt/moose/framework/build/header_symlinks/ADMortarConstraint.h:12,
                 from /opt/moose/framework/src/constraints/ADMortarConstraint.C:10,
                 from /opt/moose/framework/build/unity_src/constraints_Unity.C:2:
/usr/local/include/libmesh/elem.h:2428:10: note: candidate: 'virtual libMesh::Node*& libMesh::Elem::set_node(unsigned int)'
 2428 | Node * & Elem::set_node (const unsigned int i)
      |          ^~~~
/usr/local/include/libmesh/elem.h:2428:10: note:   candidate expects 1 argument, 2 provided
In file included from /opt/moose/framework/build/unity_src/constraints_Unity.C:7:
/opt/moose/framework/src/constraints/AutomaticMortarGeneration.C:714:67: error: no matching function for call to 'libMesh::Elem::set_node(int, libMesh::Node*)'
  714 |     new_elem_left->set_node(0, current_mortar_segment->node_ptr(0));
      |                                                                   ^
In file included from /usr/local/include/libmesh/remote_elem.h:24,
                 from /opt/moose/framework/build/header_symlinks/libMeshReducedNamespace.h:17,
                 from /opt/moose/framework/build/header_symlinks/Moose.h:12,
                 from /opt/moose/framework/build/header_symlinks/MooseTypes.h:12,
                 from /opt/moose/framework/build/header_symlinks/MooseUtils.h:13,
                 from /opt/moose/framework/build/header_symlinks/MooseObject.h:13,
                 from /opt/moose/framework/build/header_symlinks/ResidualObject.h:12,
                 from /opt/moose/framework/build/header_symlinks/NeighborResidualObject.h:12,
                 from /opt/moose/framework/build/header_symlinks/Constraint.h:13,
                 from /opt/moose/framework/build/header_symlinks/MortarConstraintBase.h:13,
                 from /opt/moose/framework/build/header_symlinks/ADMortarConstraint.h:12,
                 from /opt/moose/framework/src/constraints/ADMortarConstraint.C:10,
                 from /opt/moose/framework/build/unity_src/constraints_Unity.C:2:
/usr/local/include/libmesh/elem.h:2428:10: note: candidate: 'virtual libMesh::Node*& libMesh::Elem::set_node(unsigned int)'
 2428 | Node * & Elem::set_node (const unsigned int i)
      |          ^~~~
/usr/local/include/libmesh/elem.h:2428:10: note:   candidate expects 1 argument, 2 provided
In file included from /opt/moose/framework/build/unity_src/constraints_Unity.C:7:
/opt/moose/framework/src/constraints/AutomaticMortarGeneration.C:715:40: error: no matching function for call to 'libMesh::Elem::set_node(int, libMesh::Node* const&)'
  715 |     new_elem_left->set_node(1, new_node);
      |                                        ^
In file included from /usr/local/include/libmesh/remote_elem.h:24,
                 from /opt/moose/framework/build/header_symlinks/libMeshReducedNamespace.h:17,
                 from /opt/moose/framework/build/header_symlinks/Moose.h:12,
                 from /opt/moose/framework/build/header_symlinks/MooseTypes.h:12,
                 from /opt/moose/framework/build/header_symlinks/MooseUtils.h:13,
                 from /opt/moose/framework/build/header_symlinks/MooseObject.h:13,
                 from /opt/moose/framework/build/header_symlinks/ResidualObject.h:12,
                 from /opt/moose/framework/build/header_symlinks/NeighborResidualObject.h:12,
                 from /opt/moose/framework/build/header_symlinks/Constraint.h:13,
                 from /opt/moose/framework/build/header_symlinks/MortarConstraintBase.h:13,
                 from /opt/moose/framework/build/header_symlinks/ADMortarConstraint.h:12,
                 from /opt/moose/framework/src/constraints/ADMortarConstraint.C:10,
                 from /opt/moose/framework/build/unity_src/constraints_Unity.C:2:
/usr/local/include/libmesh/elem.h:2428:10: note: candidate: 'virtual libMesh::Node*& libMesh::Elem::set_node(unsigned int)'
 2428 | Node * & Elem::set_node (const unsigned int i)
      |          ^~~~
/usr/local/include/libmesh/elem.h:2428:10: note:   candidate expects 1 argument, 2 provided
In file included from /opt/moose/framework/build/unity_src/constraints_Unity.C:7:
/opt/moose/framework/src/constraints/AutomaticMortarGeneration.C:728:41: error: no matching function for call to 'libMesh::Elem::set_node(int, libMesh::Node* const&)'
  728 |     new_elem_right->set_node(0, new_node);
      |                                         ^
In file included from /usr/local/include/libmesh/remote_elem.h:24,
                 from /opt/moose/framework/build/header_symlinks/libMeshReducedNamespace.h:17,
                 from /opt/moose/framework/build/header_symlinks/Moose.h:12,
                 from /opt/moose/framework/build/header_symlinks/MooseTypes.h:12,
                 from /opt/moose/framework/build/header_symlinks/MooseUtils.h:13,
                 from /opt/moose/framework/build/header_symlinks/MooseObject.h:13,
                 from /opt/moose/framework/build/header_symlinks/ResidualObject.h:12,
                 from /opt/moose/framework/build/header_symlinks/NeighborResidualObject.h:12,
                 from /opt/moose/framework/build/header_symlinks/Constraint.h:13,
                 from /opt/moose/framework/build/header_symlinks/MortarConstraintBase.h:13,
                 from /opt/moose/framework/build/header_symlinks/ADMortarConstraint.h:12,
                 from /opt/moose/framework/src/constraints/ADMortarConstraint.C:10,
                 from /opt/moose/framework/build/unity_src/constraints_Unity.C:2:
/usr/local/include/libmesh/elem.h:2428:10: note: candidate: 'virtual libMesh::Node*& libMesh::Elem::set_node(unsigned int)'
 2428 | Node * & Elem::set_node (const unsigned int i)
      |          ^~~~
/usr/local/include/libmesh/elem.h:2428:10: note:   candidate expects 1 argument, 2 provided
In file included from /opt/moose/framework/build/unity_src/constraints_Unity.C:7:
/opt/moose/framework/src/constraints/AutomaticMortarGeneration.C:729:68: error: no matching function for call to 'libMesh::Elem::set_node(int, libMesh::Node*)'
  729 |     new_elem_right->set_node(1, current_mortar_segment->node_ptr(1));
      |                                                                    ^
In file included from /usr/local/include/libmesh/remote_elem.h:24,
                 from /opt/moose/framework/build/header_symlinks/libMeshReducedNamespace.h:17,
                 from /opt/moose/framework/build/header_symlinks/Moose.h:12,
                 from /opt/moose/framework/build/header_symlinks/MooseTypes.h:12,
                 from /opt/moose/framework/build/header_symlinks/MooseUtils.h:13,
                 from /opt/moose/framework/build/header_symlinks/MooseObject.h:13,
                 from /opt/moose/framework/build/header_symlinks/ResidualObject.h:12,
                 from /opt/moose/framework/build/header_symlinks/NeighborResidualObject.h:12,
                 from /opt/moose/framework/build/header_symlinks/Constraint.h:13,
                 from /opt/moose/framework/build/header_symlinks/MortarConstraintBase.h:13,
                 from /opt/moose/framework/build/header_symlinks/ADMortarConstraint.h:12,
                 from /opt/moose/framework/src/constraints/ADMortarConstraint.C:10,
                 from /opt/moose/framework/build/unity_src/constraints_Unity.C:2:
/usr/local/include/libmesh/elem.h:2428:10: note: candidate: 'virtual libMesh::Node*& libMesh::Elem::set_node(unsigned int)'
 2428 | Node * & Elem::set_node (const unsigned int i)
      |          ^~~~
/usr/local/include/libmesh/elem.h:2428:10: note:   candidate expects 1 argument, 2 provided
In file included from /opt/moose/framework/build/unity_src/constraints_Unity.C:7:
/opt/moose/framework/src/constraints/AutomaticMortarGeneration.C:752:56: error: no matching function for call to 'libMesh::Elem::set_node(int, libMesh::Node* const&)'
  752 |       new_elem_left->set_node(2, new_interior_node_left);
      |                                                        ^
In file included from /usr/local/include/libmesh/remote_elem.h:24,
                 from /opt/moose/framework/build/header_symlinks/libMeshReducedNamespace.h:17,
                 from /opt/moose/framework/build/header_symlinks/Moose.h:12,
                 from /opt/moose/framework/build/header_symlinks/MooseTypes.h:12,
                 from /opt/moose/framework/build/header_symlinks/MooseUtils.h:13,
                 from /opt/moose/framework/build/header_symlinks/MooseObject.h:13,
                 from /opt/moose/framework/build/header_symlinks/ResidualObject.h:12,
                 from /opt/moose/framework/build/header_symlinks/NeighborResidualObject.h:12,
                 from /opt/moose/framework/build/header_symlinks/Constraint.h:13,
                 from /opt/moose/framework/build/header_symlinks/MortarConstraintBase.h:13,
                 from /opt/moose/framework/build/header_symlinks/ADMortarConstraint.h:12,
                 from /opt/moose/framework/src/constraints/ADMortarConstraint.C:10,
                 from /opt/moose/framework/build/unity_src/constraints_Unity.C:2:
/usr/local/include/libmesh/elem.h:2428:10: note: candidate: 'virtual libMesh::Node*& libMesh::Elem::set_node(unsigned int)'
 2428 | Node * & Elem::set_node (const unsigned int i)
      |          ^~~~
/usr/local/include/libmesh/elem.h:2428:10: note:   candidate expects 1 argument, 2 provided
In file included from /opt/moose/framework/build/unity_src/constraints_Unity.C:7:
/opt/moose/framework/src/constraints/AutomaticMortarGeneration.C:773:58: error: no matching function for call to 'libMesh::Elem::set_node(int, libMesh::Node* const&)'
  773 |       new_elem_right->set_node(2, new_interior_node_right);
      |                                                          ^
In file included from /usr/local/include/libmesh/remote_elem.h:24,
                 from /opt/moose/framework/build/header_symlinks/libMeshReducedNamespace.h:17,
                 from /opt/moose/framework/build/header_symlinks/Moose.h:12,
                 from /opt/moose/framework/build/header_symlinks/MooseTypes.h:12,
                 from /opt/moose/framework/build/header_symlinks/MooseUtils.h:13,
                 from /opt/moose/framework/build/header_symlinks/MooseObject.h:13,
                 from /opt/moose/framework/build/header_symlinks/ResidualObject.h:12,
                 from /opt/moose/framework/build/header_symlinks/NeighborResidualObject.h:12,
                 from /opt/moose/framework/build/header_symlinks/Constraint.h:13,
                 from /opt/moose/framework/build/header_symlinks/MortarConstraintBase.h:13,
                 from /opt/moose/framework/build/header_symlinks/ADMortarConstraint.h:12,
                 from /opt/moose/framework/src/constraints/ADMortarConstraint.C:10,
                 from /opt/moose/framework/build/unity_src/constraints_Unity.C:2:
/usr/local/include/libmesh/elem.h:2428:10: note: candidate: 'virtual libMesh::Node*& libMesh::Elem::set_node(unsigned int)'
 2428 | Node * & Elem::set_node (const unsigned int i)
      |          ^~~~
/usr/local/include/libmesh/elem.h:2428:10: note:   candidate expects 1 argument, 2 provided
In file included from /opt/moose/framework/build/unity_src/constraints_Unity.C:7:
/opt/moose/framework/src/constraints/AutomaticMortarGeneration.C: In member function 'void AutomaticMortarGeneration::buildMortarSegmentMesh3d()':
/opt/moose/framework/src/constraints/AutomaticMortarGeneration.C:1269:71: error: no matching function for call to 'libMesh::Elem::set_node(long unsigned int&, libMesh::Node*&)'
 1269 |               new_elem->set_node(i, new_nodes[elem_to_node_map[el][i]]);
      |                                                                       ^
In file included from /usr/local/include/libmesh/remote_elem.h:24,
                 from /opt/moose/framework/build/header_symlinks/libMeshReducedNamespace.h:17,
                 from /opt/moose/framework/build/header_symlinks/Moose.h:12,
                 from /opt/moose/framework/build/header_symlinks/MooseTypes.h:12,
                 from /opt/moose/framework/build/header_symlinks/MooseUtils.h:13,
                 from /opt/moose/framework/build/header_symlinks/MooseObject.h:13,
                 from /opt/moose/framework/build/header_symlinks/ResidualObject.h:12,
                 from /opt/moose/framework/build/header_symlinks/NeighborResidualObject.h:12,
                 from /opt/moose/framework/build/header_symlinks/Constraint.h:13,
                 from /opt/moose/framework/build/header_symlinks/MortarConstraintBase.h:13,
                 from /opt/moose/framework/build/header_symlinks/ADMortarConstraint.h:12,
                 from /opt/moose/framework/src/constraints/ADMortarConstraint.C:10,
                 from /opt/moose/framework/build/unity_src/constraints_Unity.C:2:
/usr/local/include/libmesh/elem.h:2428:10: note: candidate: 'virtual libMesh::Node*& libMesh::Elem::set_node(unsigned int)'
 2428 | Node * & Elem::set_node (const unsigned int i)
      |          ^~~~
/usr/local/include/libmesh/elem.h:2428:10: note:   candidate expects 1 argument, 2 provided
/opt/moose/framework/build/header_symlinks/Assembly.h: In instantiation of 'void Assembly::cacheJacobianWithoutConstraints(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]':
/opt/moose/framework/build/header_symlinks/Assembly.h:3089:5:   required from 'void Assembly::cacheJacobian(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:520:3:   required from 'void TaggingInterface::addJacobian(Assembly&, const Residuals&, const Indices&, libMesh::Real) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:610:84:   required from here
/opt/moose/framework/build/header_symlinks/Assembly.h:3155:48: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'const long unsigned int')
 3155 |     const auto & sparse_derivatives = residuals[i].derivatives();
      |                                       ~~~~~~~~~^
/opt/moose/framework/build/header_symlinks/Assembly.h: In instantiation of 'void Assembly::cacheJacobianWithoutConstraints(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]':
/opt/moose/framework/build/header_symlinks/Assembly.h:3089:5:   required from 'void Assembly::cacheJacobian(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:520:3:   required from 'void TaggingInterface::addJacobian(Assembly&, const Residuals&, const Indices&, libMesh::Real) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:610:84:   required from here
/opt/moose/framework/build/header_symlinks/Assembly.h:3155:48: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'const long unsigned int')
 3155 |     const auto & sparse_derivatives = residuals[i].derivatives();
      |                                       ~~~~~~~~~^
In file included from /opt/moose/framework/build/header_symlinks/TaggingInterface.h:15,
                 from /opt/moose/framework/build/header_symlinks/ResidualObject.h:22,
                 from /opt/moose/framework/build/header_symlinks/MooseObjectWarehouse.h:16,
                 from /opt/moose/framework/build/header_symlinks/ExecuteMooseObjectWarehouse.h:13,
                 from /opt/moose/framework/build/header_symlinks/FEProblemBase.h:26,
                 from /opt/moose/framework/build/header_symlinks/SamplerInterface.h:14,
                 from /opt/moose/framework/build/header_symlinks/UserObject.h:28,
                 from /opt/moose/framework/build/header_symlinks/AuxKernel.h:31,
                 from /opt/moose/framework/build/header_symlinks/BoundsBase.h:12,
                 from /opt/moose/framework/src/bounds/BoundsBase.C:10,
                 from /opt/moose/framework/build/unity_src/bounds_Unity.C:2:
/opt/moose/framework/build/header_symlinks/Assembly.h: In instantiation of 'void Assembly::cacheJacobian(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]':
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:520:3:   required from 'void TaggingInterface::addJacobian(Assembly&, const Residuals&, const Indices&, libMesh::Real) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:610:84:   required from here
/opt/moose/framework/build/header_symlinks/Assembly.h:3094:40: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'int')
 3094 |   const auto & compare_dofs = residuals[0].derivatives().nude_indices();
      |                               ~~~~~~~~~^
/opt/moose/framework/build/header_symlinks/Assembly.h:3123:48: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'const long unsigned int')
 3123 |     const auto & sparse_derivatives = residuals[i].derivatives();
      |                                       ~~~~~~~~~^
/opt/moose/framework/build/header_symlinks/Assembly.h: In instantiation of 'void Assembly::cacheJacobianWithoutConstraints(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]':
/opt/moose/framework/build/header_symlinks/Assembly.h:3089:5:   required from 'void Assembly::cacheJacobian(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:520:3:   required from 'void TaggingInterface::addJacobian(Assembly&, const Residuals&, const Indices&, libMesh::Real) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:610:84:   required from here
/opt/moose/framework/build/header_symlinks/Assembly.h:3155:48: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'const long unsigned int')
 3155 |     const auto & sparse_derivatives = residuals[i].derivatives();
      |                                       ~~~~~~~~~^
In file included from /opt/moose/framework/build/header_symlinks/TaggingInterface.h:15,
                 from /opt/moose/framework/build/header_symlinks/ResidualObject.h:22,
                 from /opt/moose/framework/build/header_symlinks/MooseObjectWarehouse.h:16,
                 from /opt/moose/framework/build/header_symlinks/ExecuteMooseObjectWarehouse.h:13,
                 from /opt/moose/framework/build/header_symlinks/FEProblemBase.h:26,
                 from /opt/moose/framework/src/restart/DataIO.C:13,
                 from /opt/moose/framework/build/unity_src/restart_Unity.C:3:
/opt/moose/framework/build/header_symlinks/Assembly.h: In instantiation of 'void Assembly::cacheJacobian(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]':
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:520:3:   required from 'void TaggingInterface::addJacobian(Assembly&, const Residuals&, const Indices&, libMesh::Real) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:610:84:   required from here
/opt/moose/framework/build/header_symlinks/Assembly.h:3094:40: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'int')
 3094 |   const auto & compare_dofs = residuals[0].derivatives().nude_indices();
      |                               ~~~~~~~~~^
/opt/moose/framework/build/header_symlinks/Assembly.h:3123:48: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'const long unsigned int')
 3123 |     const auto & sparse_derivatives = residuals[i].derivatives();
      |                                       ~~~~~~~~~^
In file included from /opt/moose/framework/build/header_symlinks/TaggingInterface.h:15,
                 from /opt/moose/framework/build/header_symlinks/ResidualObject.h:22,
                 from /opt/moose/framework/build/header_symlinks/MooseObjectWarehouse.h:16,
                 from /opt/moose/framework/build/header_symlinks/ConstraintWarehouse.h:13,
                 from /opt/moose/framework/build/header_symlinks/NonlinearSystemBase.h:13,
                 from /opt/moose/framework/build/header_symlinks/NonlinearSystem.h:12,
                 from /opt/moose/framework/src/timeintegrators/AStableDirk4.C:12,
                 from /opt/moose/framework/build/unity_src/timeintegrators_Unity.C:2:
/opt/moose/framework/build/header_symlinks/Assembly.h: In instantiation of 'void Assembly::cacheJacobian(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]':
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:520:3:   required from 'void TaggingInterface::addJacobian(Assembly&, const Residuals&, const Indices&, libMesh::Real) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:610:84:   required from here
/opt/moose/framework/build/header_symlinks/Assembly.h:3094:40: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'int')
 3094 |   const auto & compare_dofs = residuals[0].derivatives().nude_indices();
      |                               ~~~~~~~~~^
/opt/moose/framework/build/header_symlinks/Assembly.h:3123:48: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'const long unsigned int')
 3123 |     const auto & sparse_derivatives = residuals[i].derivatives();
      |                                       ~~~~~~~~~^
/opt/moose/framework/build/header_symlinks/Assembly.h: In instantiation of 'void Assembly::cacheJacobianWithoutConstraints(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]':
/opt/moose/framework/build/header_symlinks/Assembly.h:3089:5:   required from 'void Assembly::cacheJacobian(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:520:3:   required from 'void TaggingInterface::addJacobian(Assembly&, const Residuals&, const Indices&, libMesh::Real) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:610:84:   required from here
/opt/moose/framework/build/header_symlinks/Assembly.h:3155:48: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'const long unsigned int')
 3155 |     const auto & sparse_derivatives = residuals[i].derivatives();
      |                                       ~~~~~~~~~^
make: *** [/opt/moose/framework/build.mk:159: /opt/moose/framework/build/unity_src/distributions_Unity.x86_64-pc-linux-gnu.opt.lo] Error 1
make: *** Waiting for unfinished jobs....
make: *** [/opt/moose/framework/build.mk:159: /opt/moose/framework/build/unity_src/nodalkernels_Unity.x86_64-pc-linux-gnu.opt.lo] Error 1
make: *** [/opt/moose/framework/build.mk:159: /opt/moose/framework/build/unity_src/dampers_Unity.x86_64-pc-linux-gnu.opt.lo] Error 1
/opt/moose/framework/build/header_symlinks/Assembly.h: In instantiation of 'void Assembly::cacheJacobianWithoutConstraints(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]':
/opt/moose/framework/build/header_symlinks/Assembly.h:3089:5:   required from 'void Assembly::cacheJacobian(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:520:3:   required from 'void TaggingInterface::addJacobian(Assembly&, const Residuals&, const Indices&, libMesh::Real) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:610:84:   required from here
/opt/moose/framework/build/header_symlinks/Assembly.h:3155:48: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'const long unsigned int')
 3155 |     const auto & sparse_derivatives = residuals[i].derivatives();
      |                                       ~~~~~~~~~^
In file included from /opt/moose/framework/build/header_symlinks/TaggingInterface.h:15,
                 from /opt/moose/framework/build/header_symlinks/ResidualObject.h:22,
                 from /opt/moose/framework/build/header_symlinks/NeighborResidualObject.h:12,
                 from /opt/moose/framework/build/header_symlinks/Constraint.h:13,
                 from /opt/moose/framework/build/header_symlinks/MortarConstraintBase.h:13,
                 from /opt/moose/framework/build/header_symlinks/ADMortarConstraint.h:12,
                 from /opt/moose/framework/src/constraints/ADMortarConstraint.C:10,
                 from /opt/moose/framework/build/unity_src/constraints_Unity.C:2:
/opt/moose/framework/build/header_symlinks/Assembly.h: In instantiation of 'void Assembly::cacheJacobian(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]':
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:520:3:   required from 'void TaggingInterface::addJacobian(Assembly&, const Residuals&, const Indices&, libMesh::Real) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:610:84:   required from here
/opt/moose/framework/build/header_symlinks/Assembly.h:3094:40: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'int')
 3094 |   const auto & compare_dofs = residuals[0].derivatives().nude_indices();
      |                               ~~~~~~~~~^
/opt/moose/framework/build/header_symlinks/Assembly.h:3123:48: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'const long unsigned int')
 3123 |     const auto & sparse_derivatives = residuals[i].derivatives();
      |                                       ~~~~~~~~~^
In file included from /opt/moose/framework/build/header_symlinks/TaggingInterface.h:15,
                 from /opt/moose/framework/build/header_symlinks/ResidualObject.h:22,
                 from /opt/moose/framework/build/header_symlinks/MooseObjectWarehouse.h:16,
                 from /opt/moose/framework/build/header_symlinks/ExecuteMooseObjectWarehouse.h:13,
                 from /opt/moose/framework/build/header_symlinks/FEProblemBase.h:26,
                 from /opt/moose/framework/build/header_symlinks/SamplerInterface.h:14,
                 from /opt/moose/framework/build/header_symlinks/UserObject.h:28,
                 from /opt/moose/framework/build/header_symlinks/AuxKernel.h:31,
                 from /opt/moose/framework/build/header_symlinks/AdvectiveFluxAux.h:12,
                 from /opt/moose/framework/src/auxkernels/AdvectiveFluxAux.C:10,
                 from /opt/moose/framework/build/unity_src/auxkernels_Unity.C:2:
/opt/moose/framework/build/header_symlinks/Assembly.h: In instantiation of 'void Assembly::cacheJacobian(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]':
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:520:3:   required from 'void TaggingInterface::addJacobian(Assembly&, const Residuals&, const Indices&, libMesh::Real) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:610:84:   required from here
/opt/moose/framework/build/header_symlinks/Assembly.h:3094:40: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'int')
 3094 |   const auto & compare_dofs = residuals[0].derivatives().nude_indices();
      |                               ~~~~~~~~~^
/opt/moose/framework/build/header_symlinks/Assembly.h:3123:48: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'const long unsigned int')
 3123 |     const auto & sparse_derivatives = residuals[i].derivatives();
      |                                       ~~~~~~~~~^
make: *** [/opt/moose/framework/build.mk:159: /opt/moose/framework/build/unity_src/bounds_Unity.x86_64-pc-linux-gnu.opt.lo] Error 1
/opt/moose/framework/build/header_symlinks/Assembly.h: In instantiation of 'void Assembly::cacheJacobianWithoutConstraints(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]':
/opt/moose/framework/build/header_symlinks/Assembly.h:3089:5:   required from 'void Assembly::cacheJacobian(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:520:3:   required from 'void TaggingInterface::addJacobian(Assembly&, const Residuals&, const Indices&, libMesh::Real) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:610:84:   required from here
/opt/moose/framework/build/header_symlinks/Assembly.h:3155:48: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'const long unsigned int')
 3155 |     const auto & sparse_derivatives = residuals[i].derivatives();
      |                                       ~~~~~~~~~^
make: *** [/opt/moose/framework/build.mk:159: /opt/moose/framework/build/unity_src/restart_Unity.x86_64-pc-linux-gnu.opt.lo] Error 1
/opt/moose/framework/build/header_symlinks/Assembly.h: In instantiation of 'void Assembly::cacheJacobianWithoutConstraints(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]':
/opt/moose/framework/build/header_symlinks/Assembly.h:3089:5:   required from 'void Assembly::cacheJacobian(const Residuals&, const Indices&, libMesh::Real, Assembly::LocalDataKey, const std::set<unsigned int>&) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:520:3:   required from 'void TaggingInterface::addJacobian(Assembly&, const Residuals&, const Indices&, libMesh::Real) [with Residuals = libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >; Indices = std::vector<long unsigned int>; libMesh::Real = double]'
/opt/moose/framework/build/header_symlinks/TaggingInterface.h:610:84:   required from here
/opt/moose/framework/build/header_symlinks/Assembly.h:3155:48: error: no match for 'operator[]' (operand types are 'const libMesh::DenseVector<MetaPhysicL::DualNumber<double, MetaPhysicL::SemiDynamicSparseNumberArray<double, long unsigned int, MetaPhysicL::NWrapper<64> >, true> >' and 'const long unsigned int')
 3155 |     const auto & sparse_derivatives = residuals[i].derivatives();
      |                                       ~~~~~~~~~^
make: *** [/opt/moose/framework/build.mk:159: /opt/moose/framework/build/unity_src/timeintegrators_Unity.x86_64-pc-linux-gnu.opt.lo] Error 1
make: *** [/opt/moose/framework/build.mk:159: /opt/moose/framework/build/unity_src/constraints_Unity.x86_64-pc-linux-gnu.opt.lo] Error 1
make: *** [/opt/moose/framework/build.mk:159: /opt/moose/framework/build/unity_src/auxkernels_Unity.x86_64-pc-linux-gnu.opt.lo] Error 1

[GiudGiud]

Hello

I think your diagnosis is correct.
git submodule status should give you the commit to use for libMesh. i am not sure what to do in Docker with that though

[loganharbour]

Sorry for the delay. If you're starting with the contents in docker_ci, we don't support those builds anymore and they're not tested in CI.

What's your use case here? In general, we utilize apptainer for all of our builds (both for CI/CD and deployment on HPC resources). I would like to in time transition those builds to docker (as we can easily port docker -> apptainer), but it isn't on the priority list at the moment.