add location #11
Workflow file for this run
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| name: PR Checks | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| - develop | |
| paths: | |
| - 'libs/**' | |
| - '.github/workflows/pr-checks.yml' | |
| jobs: | |
| detect-changes: | |
| name: Detect Changed Libraries | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| has-changes: ${{ steps.set-matrix.outputs.has-changes }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # Fetch all history for accurate change detection | |
| - name: Detect changed libraries | |
| id: set-matrix | |
| run: | | |
| # Get the base branch (main or develop) | |
| BASE_REF="${{ github.event.pull_request.base.ref }}" | |
| HEAD_REF="${{ github.event.pull_request.head.sha }}" | |
| echo "Comparing changes between origin/${BASE_REF} and ${HEAD_REF}" | |
| # Fetch the base branch | |
| git fetch origin ${BASE_REF} | |
| # Get list of changed files | |
| CHANGED_FILES=$(git diff --name-only origin/${BASE_REF}...${HEAD_REF}) | |
| echo "Changed files:" | |
| echo "$CHANGED_FILES" | |
| # Initialize array to track changed libraries | |
| CHANGED_LIBS=() | |
| # Get all directories under libs/ | |
| ALL_LIBS=$(find libs -maxdepth 1 -mindepth 1 -type d -exec basename {} \;) | |
| echo "All libraries found: $ALL_LIBS" | |
| # Check for root-level changes that affect all libraries | |
| if echo "$CHANGED_FILES" | grep -qE "^(pyproject.toml|Makefile|setup.sh)$"; then | |
| echo "✓ Root-level files changed, testing all libraries" | |
| CHANGED_LIBS=($ALL_LIBS) | |
| else | |
| for lib in $ALL_LIBS; do | |
| if echo "$CHANGED_FILES" | grep -q "^libs/${lib}/"; then | |
| echo "✓ Library '${lib}' has changes" | |
| CHANGED_LIBS+=("${lib}") | |
| fi | |
| done | |
| fi | |
| # Create matrix JSON with library and python-version combinations | |
| if [ ${#CHANGED_LIBS[@]} -eq 0 ]; then | |
| echo "No library changes detected" | |
| echo "matrix={\"include\":[]}" >> $GITHUB_OUTPUT | |
| echo "has-changes=false" >> $GITHUB_OUTPUT | |
| else | |
| echo "Building matrix for libraries: ${CHANGED_LIBS[@]}" | |
| # Build matrix with library and python-version combinations | |
| MATRIX_INCLUDE="[" | |
| FIRST=true | |
| for lib in "${CHANGED_LIBS[@]}"; do | |
| # Read python versions from the library's python_versions.json | |
| PYTHON_VERSIONS=$(cat "libs/${lib}/python_versions.json" | jq -r '.[]') | |
| for py_version in $PYTHON_VERSIONS; do | |
| if [ "$FIRST" = true ]; then | |
| FIRST=false | |
| else | |
| MATRIX_INCLUDE+="," | |
| fi | |
| MATRIX_INCLUDE+="{\"library\":\"${lib}\",\"python-version\":\"${py_version}\"}" | |
| done | |
| done | |
| MATRIX_INCLUDE+="]" | |
| MATRIX_JSON="{\"include\":${MATRIX_INCLUDE}}" | |
| echo "Matrix JSON: ${MATRIX_JSON}" | |
| echo "matrix=${MATRIX_JSON}" >> $GITHUB_OUTPUT | |
| echo "has-changes=true" >> $GITHUB_OUTPUT | |
| fi | |
| build-and-test: | |
| name: Build ${{ matrix.library }} (Python ${{ matrix.python-version }}) | |
| needs: detect-changes | |
| if: needs.detect-changes.outputs.has-changes == 'true' | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: ${{ fromJson(needs.detect-changes.outputs.matrix) }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # Needed for setuptools_scm versioning | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install uv | |
| run: | | |
| curl -LsSf https://astral.sh/uv/install.sh | sh | |
| echo "$HOME/.cargo/bin" >> $GITHUB_PATH | |
| - name: Install vivarium_build_utils | |
| run: | | |
| uv pip install --system vivarium_build_utils | |
| - name: Install dependencies for ${{ matrix.library }} | |
| run: | | |
| cd libs/${{ matrix.library }} | |
| # Install the package with dev dependencies | |
| uv pip install --system -e ".[dev]" | |
| - name: Linting ${{ matrix.library }} | |
| run: | | |
| cd libs/${{ matrix.library }} | |
| echo "Running linting..." | |
| make lint | |
| - name: Running mypy for ${{ matrix.library }} | |
| run: | | |
| cd libs/${{ matrix.library }} | |
| if [ -f "src/${{ matrix.library }}/py.typed" ]; then | |
| echo "Running mypy..." | |
| make mypy | |
| else | |
| echo "Library is untyped. Skipping mypy." | |
| fi | |
| - name: Running tests for ${{ matrix.library }} | |
| run: | | |
| cd libs/${{ matrix.library }} | |
| echo "Running fast tests..." | |
| make test-all | |
| - name: Building docs for ${{ matrix.library }} | |
| run: | | |
| if [ ${{ matrix.python-version }} = "3.11" ]; then | |
| cd libs/${{ matrix.library }} | |
| echo "Building documentation" | |
| make build-docs | |
| else | |
| echo "Skipping documentation build (Python $$PYTHON_VERSION, only builds on 3.11)" | |
| fi | |
| - name: Running doctest for ${{ matrix.library }} | |
| run: | | |
| if [ ${{ matrix.python-version }} = "3.11" ]; then | |
| cd libs/${{ matrix.library }} | |
| echo "Running doctest..." | |
| make test-docs | |
| else | |
| echo "Skipping doctests (Python $$PYTHON_VERSION, only builds on 3.11)" | |
| fi | |
| pr-status-check: | |
| name: PR Status Check | |
| needs: [detect-changes, build-and-test] | |
| if: always() | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check build status | |
| run: | | |
| if [ "${{ needs.detect-changes.outputs.has-changes }}" == "false" ]; then | |
| echo "✓ No library changes detected - PR checks passed" | |
| exit 0 | |
| elif [ "${{ needs.build-and-test.result }}" == "success" ]; then | |
| echo "✓ All library builds passed" | |
| exit 0 | |
| elif [ "${{ needs.build-and-test.result }}" == "skipped" ]; then | |
| echo "✓ No libraries to build" | |
| exit 0 | |
| else | |
| echo "✗ Some library builds failed" | |
| exit 1 | |
| fi |