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final run scenario files
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12 files changed

+400
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src/vivarium_csu_alzheimers/model_specifications/branches/scenarios.yaml renamed to src/vivarium_csu_alzheimers/model_specifications/branches/scenarios_1.yaml

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input_draw_count: 25
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input_draw_count: 2
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random_seed_count: 100
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input_draws: [172, 235] # run 1
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# input_draws: [204, 219] # run 2
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# input_draws: [245, 69] # run 3
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# input_draws: [1, 211] # run 4
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# input_draws: [35, 187] # run 5
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# input_draws: [6, 249] # run 6
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# input_draws: [7, 236] # run 7
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# input_draws: [183, 103] # run 8
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# input_draws: [41, 123] # run 9
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# input_draws: [63, 199] # run 10
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# input_draws: [248, 122] # run 11
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# input_draws: [161, 50, 24] # run 12
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branches:
519
- intervention:
620
scenario:

‎src/vivarium_csu_alzheimers/model_specifications/branches/scenarios_10.yaml‎

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input_draw_count: 2
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random_seed_count: 100
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4+
# input_draws: [172, 235] # run 1
5+
# input_draws: [204, 219] # run 2
6+
# input_draws: [245, 69] # run 3
7+
# input_draws: [1, 211] # run 4
8+
# input_draws: [35, 187] # run 5
9+
# input_draws: [6, 249] # run 6
10+
# input_draws: [7, 236] # run 7
11+
# input_draws: [183, 103] # run 8
12+
# input_draws: [41, 123] # run 9
13+
input_draws: [63, 199] # run 10
14+
# input_draws: [248, 122] # run 11
15+
# input_draws: [161, 50, 24] # run 12
16+
17+
18+
branches:
19+
- intervention:
20+
scenario:
21+
- baseline
22+
- bbbm_testing
23+
- bbbm_testing_and_treatment
24+
input_data:
25+
artifact_path:
26+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/united_states_of_america.hdf'
27+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/china.hdf'
28+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/brazil.hdf'
29+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/germany.hdf'
30+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/israel.hdf'
31+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/japan.hdf'
32+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/spain.hdf'
33+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/sweden.hdf'
34+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/taiwan_(province_of_china).hdf'
35+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/united_kingdom.hdf'

‎src/vivarium_csu_alzheimers/model_specifications/branches/scenarios_11.yaml‎

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input_draw_count: 2
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random_seed_count: 100
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# input_draws: [172, 235] # run 1
5+
# input_draws: [204, 219] # run 2
6+
# input_draws: [245, 69] # run 3
7+
# input_draws: [1, 211] # run 4
8+
# input_draws: [35, 187] # run 5
9+
# input_draws: [6, 249] # run 6
10+
# input_draws: [7, 236] # run 7
11+
# input_draws: [183, 103] # run 8
12+
# input_draws: [41, 123] # run 9
13+
# input_draws: [63, 199] # run 10
14+
input_draws: [248, 122] # run 11
15+
# input_draws: [161, 50, 24] # run 12
16+
17+
18+
branches:
19+
- intervention:
20+
scenario:
21+
- baseline
22+
- bbbm_testing
23+
- bbbm_testing_and_treatment
24+
input_data:
25+
artifact_path:
26+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/united_states_of_america.hdf'
27+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/china.hdf'
28+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/brazil.hdf'
29+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/germany.hdf'
30+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/israel.hdf'
31+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/japan.hdf'
32+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/spain.hdf'
33+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/sweden.hdf'
34+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/taiwan_(province_of_china).hdf'
35+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/united_kingdom.hdf'

‎src/vivarium_csu_alzheimers/model_specifications/branches/scenarios_12.yaml‎

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input_draw_count: 2
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random_seed_count: 100
3+
4+
# input_draws: [172, 235] # run 1
5+
# input_draws: [204, 219] # run 2
6+
# input_draws: [245, 69] # run 3
7+
# input_draws: [1, 211] # run 4
8+
# input_draws: [35, 187] # run 5
9+
# input_draws: [6, 249] # run 6
10+
# input_draws: [7, 236] # run 7
11+
# input_draws: [183, 103] # run 8
12+
# input_draws: [41, 123] # run 9
13+
# input_draws: [63, 199] # run 10
14+
# input_draws: [248, 122] # run 11
15+
input_draws: [161, 50, 24] # run 12
16+
17+
18+
branches:
19+
- intervention:
20+
scenario:
21+
- baseline
22+
- bbbm_testing
23+
- bbbm_testing_and_treatment
24+
input_data:
25+
artifact_path:
26+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/united_states_of_america.hdf'
27+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/china.hdf'
28+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/brazil.hdf'
29+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/germany.hdf'
30+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/israel.hdf'
31+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/japan.hdf'
32+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/spain.hdf'
33+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/sweden.hdf'
34+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/taiwan_(province_of_china).hdf'
35+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/united_kingdom.hdf'

‎src/vivarium_csu_alzheimers/model_specifications/branches/scenarios_2.yaml‎

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input_draw_count: 2
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random_seed_count: 100
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4+
# input_draws: [172, 235] # run 1
5+
input_draws: [204, 219] # run 2
6+
# input_draws: [245, 69] # run 3
7+
# input_draws: [1, 211] # run 4
8+
# input_draws: [35, 187] # run 5
9+
# input_draws: [6, 249] # run 6
10+
# input_draws: [7, 236] # run 7
11+
# input_draws: [183, 103] # run 8
12+
# input_draws: [41, 123] # run 9
13+
# input_draws: [63, 199] # run 10
14+
# input_draws: [248, 122] # run 11
15+
# input_draws: [161, 50, 24] # run 12
16+
17+
18+
branches:
19+
- intervention:
20+
scenario:
21+
- baseline
22+
- bbbm_testing
23+
- bbbm_testing_and_treatment
24+
input_data:
25+
artifact_path:
26+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/united_states_of_america.hdf'
27+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/china.hdf'
28+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/brazil.hdf'
29+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/germany.hdf'
30+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/israel.hdf'
31+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/japan.hdf'
32+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/spain.hdf'
33+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/sweden.hdf'
34+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/taiwan_(province_of_china).hdf'
35+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/united_kingdom.hdf'

‎src/vivarium_csu_alzheimers/model_specifications/branches/scenarios_3.yaml‎

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input_draw_count: 2
2+
random_seed_count: 100
3+
4+
# input_draws: [172, 235] # run 1
5+
# input_draws: [204, 219] # run 2
6+
input_draws: [245, 69] # run 3
7+
# input_draws: [1, 211] # run 4
8+
# input_draws: [35, 187] # run 5
9+
# input_draws: [6, 249] # run 6
10+
# input_draws: [7, 236] # run 7
11+
# input_draws: [183, 103] # run 8
12+
# input_draws: [41, 123] # run 9
13+
# input_draws: [63, 199] # run 10
14+
# input_draws: [248, 122] # run 11
15+
# input_draws: [161, 50, 24] # run 12
16+
17+
18+
branches:
19+
- intervention:
20+
scenario:
21+
- baseline
22+
- bbbm_testing
23+
- bbbm_testing_and_treatment
24+
input_data:
25+
artifact_path:
26+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/united_states_of_america.hdf'
27+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/china.hdf'
28+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/brazil.hdf'
29+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/germany.hdf'
30+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/israel.hdf'
31+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/japan.hdf'
32+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/spain.hdf'
33+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/sweden.hdf'
34+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/taiwan_(province_of_china).hdf'
35+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/united_kingdom.hdf'

‎src/vivarium_csu_alzheimers/model_specifications/branches/scenarios_4.yaml‎

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input_draw_count: 2
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random_seed_count: 100
3+
4+
# input_draws: [172, 235] # run 1
5+
# input_draws: [204, 219] # run 2
6+
# input_draws: [245, 69] # run 3
7+
input_draws: [1, 211] # run 4
8+
# input_draws: [35, 187] # run 5
9+
# input_draws: [6, 249] # run 6
10+
# input_draws: [7, 236] # run 7
11+
# input_draws: [183, 103] # run 8
12+
# input_draws: [41, 123] # run 9
13+
# input_draws: [63, 199] # run 10
14+
# input_draws: [248, 122] # run 11
15+
# input_draws: [161, 50, 24] # run 12
16+
17+
18+
branches:
19+
- intervention:
20+
scenario:
21+
- baseline
22+
- bbbm_testing
23+
- bbbm_testing_and_treatment
24+
input_data:
25+
artifact_path:
26+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/united_states_of_america.hdf'
27+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/china.hdf'
28+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/brazil.hdf'
29+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/germany.hdf'
30+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/israel.hdf'
31+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/japan.hdf'
32+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/spain.hdf'
33+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/sweden.hdf'
34+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/taiwan_(province_of_china).hdf'
35+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/united_kingdom.hdf'

‎src/vivarium_csu_alzheimers/model_specifications/branches/scenarios_5.yaml‎

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input_draw_count: 2
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random_seed_count: 100
3+
4+
# input_draws: [172, 235] # run 1
5+
# input_draws: [204, 219] # run 2
6+
# input_draws: [245, 69] # run 3
7+
# input_draws: [1, 211] # run 4
8+
input_draws: [35, 187] # run 5
9+
# input_draws: [6, 249] # run 6
10+
# input_draws: [7, 236] # run 7
11+
# input_draws: [183, 103] # run 8
12+
# input_draws: [41, 123] # run 9
13+
# input_draws: [63, 199] # run 10
14+
# input_draws: [248, 122] # run 11
15+
# input_draws: [161, 50, 24] # run 12
16+
17+
18+
branches:
19+
- intervention:
20+
scenario:
21+
- baseline
22+
- bbbm_testing
23+
- bbbm_testing_and_treatment
24+
input_data:
25+
artifact_path:
26+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/united_states_of_america.hdf'
27+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/china.hdf'
28+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/brazil.hdf'
29+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/germany.hdf'
30+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/israel.hdf'
31+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/japan.hdf'
32+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/spain.hdf'
33+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/sweden.hdf'
34+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/taiwan_(province_of_china).hdf'
35+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/united_kingdom.hdf'

‎src/vivarium_csu_alzheimers/model_specifications/branches/scenarios_6.yaml‎

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input_draw_count: 2
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random_seed_count: 100
3+
4+
# input_draws: [172, 235] # run 1
5+
# input_draws: [204, 219] # run 2
6+
# input_draws: [245, 69] # run 3
7+
# input_draws: [1, 211] # run 4
8+
# input_draws: [35, 187] # run 5
9+
input_draws: [6, 249] # run 6
10+
# input_draws: [7, 236] # run 7
11+
# input_draws: [183, 103] # run 8
12+
# input_draws: [41, 123] # run 9
13+
# input_draws: [63, 199] # run 10
14+
# input_draws: [248, 122] # run 11
15+
# input_draws: [161, 50, 24] # run 12
16+
17+
18+
branches:
19+
- intervention:
20+
scenario:
21+
- baseline
22+
- bbbm_testing
23+
- bbbm_testing_and_treatment
24+
input_data:
25+
artifact_path:
26+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/united_states_of_america.hdf'
27+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/china.hdf'
28+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/brazil.hdf'
29+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/germany.hdf'
30+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/israel.hdf'
31+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/japan.hdf'
32+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/spain.hdf'
33+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/sweden.hdf'
34+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/taiwan_(province_of_china).hdf'
35+
- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/united_kingdom.hdf'

‎src/vivarium_csu_alzheimers/model_specifications/branches/scenarios_7.yaml‎

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input_draw_count: 2
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random_seed_count: 100
3+
4+
# input_draws: [172, 235] # run 1
5+
# input_draws: [204, 219] # run 2
6+
# input_draws: [245, 69] # run 3
7+
# input_draws: [1, 211] # run 4
8+
# input_draws: [35, 187] # run 5
9+
# input_draws: [6, 249] # run 6
10+
input_draws: [7, 236] # run 7
11+
# input_draws: [183, 103] # run 8
12+
# input_draws: [41, 123] # run 9
13+
# input_draws: [63, 199] # run 10
14+
# input_draws: [248, 122] # run 11
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# input_draws: [161, 50, 24] # run 12
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branches:
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- intervention:
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scenario:
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- baseline
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- bbbm_testing
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- bbbm_testing_and_treatment
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input_data:
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artifact_path:
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- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/united_states_of_america.hdf'
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- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/china.hdf'
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- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/brazil.hdf'
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- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/germany.hdf'
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- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/israel.hdf'
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- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/japan.hdf'
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- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/spain.hdf'
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- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/sweden.hdf'
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- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/taiwan_(province_of_china).hdf'
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- '/mnt/team/simulation_science/pub/models/vivarium_csu_alzheimers/artifacts/model10.0/united_kingdom.hdf'

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