@@ -101,29 +101,14 @@ You'll find six directories inside the main
101101 data or process outputs.
102102
103103
104- Running Simulations
105- -------------------
106-
107- Before running a simulation, you should have a model specification file.
108- A model specification is a complete description of a vivarium model in
109- a yaml format. An example model specification is provided with this repository
110- in the ``model_specifications `` directory.
111-
112- With this model specification file and your conda environment active, you can then run simulations by, e.g.::
113-
114- (vivarium_profiling) :~$ simulate run -v /<REPO_INSTALLATION_DIRECTORY>/vivarium_profiling/src/vivarium_profiling/model_specifications/model_spec.yaml
115-
116- The ``-v `` flag will log verbosely, so you will get log messages every time
117- step. For more ways to run simulations, see the tutorials at
118- https://vivarium.readthedocs.io/en/latest/tutorials/running_a_simulation/index.html
119- and https://vivarium.readthedocs.io/en/latest/tutorials/exploration.html
120-
121-
122104Profiling and Benchmarking
123105---------------------------
124106
125107This repository provides tools for profiling and benchmarking Vivarium simulations
126- to analyze their performance characteristics.
108+ to analyze their performance characteristics. See the tutorials at
109+ https://vivarium.readthedocs.io/en/latest/tutorials/running_a_simulation/index.html
110+ and https://vivarium.readthedocs.io/en/latest/tutorials/exploration.html for general instructions
111+ on running simulations with Vivarium.
127112
128113Configuring Scaling Simulations
129114~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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