From 028612dc5e354c3880d1d5cf281f971e0f03b7c0 Mon Sep 17 00:00:00 2001 From: Alix Pletcher Date: Wed, 6 Aug 2025 08:48:57 -0700 Subject: [PATCH 1/7] Update links to IFA/MMS GA shifts --- .../oral_iron_antenatal/oral_iron_antenatal.rst | 13 ++++--------- 1 file changed, 4 insertions(+), 9 deletions(-) diff --git a/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst b/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst index 81f6254642..af85a0ba51 100644 --- a/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst +++ b/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst @@ -387,7 +387,7 @@ Additionally, our methods differ from GBD's in that we estimated two separate GA 2. Find and apply a second shift that replicates the preterm birth dichotomous effect when applied only to the portion of the distribution with baseline gestational age exposures that are *greater* than 32 (the very preterm birth threshold) *minus* this second shift. Note that the second shift will be negative in direction. -`The estimation of the antenatal supplementation gestational age shifts as described was performed in this notebook `_ +`The estimation of the antenatal supplementation gestational age shifts as described was performed in this notebook `_ Assumptions and limitations ~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -465,17 +465,12 @@ Where, * - Parameter - Value * - IFA_SHIFT - - `Location-specific .csv files of IFA_SHIFT values can be found here `_ + - `Location-specific .csv files of IFA_SHIFT values can be found here `_ * - MMS_SHIFT_1 - - `Location-specific .csv files of MMS_SHIFT_1 values can be found here `_ + - `Location-specific .csv files of MMS_SHIFT_1 values can be found here `_ * - MMS_SHIFT_2 - - `Location-specific .csv files of MMS_SHIFT_2 values can be found here `_ + - `Location-specific .csv files of MMS_SHIFT_2 values can be found here `_ -.. todo:: - - These notebooks are outdated from the Nutrition Optimization project, so we need to update the above notebook links once we update to new GBD rounds - and to the locations of interest for the :ref:`MNCNH Portfolio <2024_concept_model_vivarium_mncnh_portfolio>` simulation. - Here is the relevant `JIRA ticket `_. Verification and validation criteria ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ From 313f9bed901729eda8c0a2ba478d6bebac8e7c70 Mon Sep 17 00:00:00 2001 From: Alix Pletcher Date: Thu, 7 Aug 2025 10:10:29 -0700 Subject: [PATCH 2/7] Fix links --- .../oral_iron_antenatal/oral_iron_antenatal.rst | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst b/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst index af85a0ba51..96bea427b9 100644 --- a/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst +++ b/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst @@ -387,7 +387,7 @@ Additionally, our methods differ from GBD's in that we estimated two separate GA 2. Find and apply a second shift that replicates the preterm birth dichotomous effect when applied only to the portion of the distribution with baseline gestational age exposures that are *greater* than 32 (the very preterm birth threshold) *minus* this second shift. Note that the second shift will be negative in direction. -`The estimation of the antenatal supplementation gestational age shifts as described was performed in this notebook `_ +`The estimation of the antenatal supplementation gestational age shifts as described was performed in this notebook `_ Assumptions and limitations ~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -465,11 +465,11 @@ Where, * - Parameter - Value * - IFA_SHIFT - - `Location-specific .csv files of IFA_SHIFT values can be found here `_ + - `Location-specific .csv files of IFA_SHIFT values can be found here `_ * - MMS_SHIFT_1 - - `Location-specific .csv files of MMS_SHIFT_1 values can be found here `_ + - `Location-specific .csv files of MMS_SHIFT_1 values can be found here `_ * - MMS_SHIFT_2 - - `Location-specific .csv files of MMS_SHIFT_2 values can be found here `_ + - `Location-specific .csv files of MMS_SHIFT_2 values can be found here `_ Verification and validation criteria From 78440a9a6a4c1ad12f1720a9ea179c6b9715bc2d Mon Sep 17 00:00:00 2001 From: Alix Pletcher Date: Tue, 12 Aug 2025 11:05:13 -0700 Subject: [PATCH 3/7] Add todo for updating to GBD 2023 --- .../oral_iron_antenatal/oral_iron_antenatal.rst | 3 +++ 1 file changed, 3 insertions(+) diff --git a/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst b/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst index 96bea427b9..8af13f57ca 100644 --- a/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst +++ b/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst @@ -471,6 +471,9 @@ Where, * - MMS_SHIFT_2 - `Location-specific .csv files of MMS_SHIFT_2 values can be found here `_ +.. todo:: + + The values in these CSVs rely on the GBD 2021 LBWSG exposure distribution and therefore will need to be updated when the GBD 2023 estimates are available. Verification and validation criteria ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ From 78905351ccf2df200b765ca3662a73e20b571211 Mon Sep 17 00:00:00 2001 From: Alix Pletcher <51676259+pletale@users.noreply.github.com> Date: Tue, 12 Aug 2025 11:31:03 -0700 Subject: [PATCH 4/7] Update docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst Co-authored-by: Zeb Burke-Conte --- .../mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst b/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst index 8af13f57ca..b59608c5c9 100644 --- a/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst +++ b/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst @@ -465,7 +465,7 @@ Where, * - Parameter - Value * - IFA_SHIFT - - `Location-specific .csv files of IFA_SHIFT values can be found here `_ + - `Location-specific IFA_SHIFT values can be found here `_ * - MMS_SHIFT_1 - `Location-specific .csv files of MMS_SHIFT_1 values can be found here `_ * - MMS_SHIFT_2 From d3e60ab511f51900bc6396a80cdbdab9c32f69d9 Mon Sep 17 00:00:00 2001 From: Alix Pletcher Date: Tue, 12 Aug 2025 11:32:24 -0700 Subject: [PATCH 5/7] Update note --- .../mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst b/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst index b59608c5c9..7869a20962 100644 --- a/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst +++ b/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst @@ -473,7 +473,7 @@ Where, .. todo:: - The values in these CSVs rely on the GBD 2021 LBWSG exposure distribution and therefore will need to be updated when the GBD 2023 estimates are available. + The values in these CSVs rely on the GBD 2021 LBWSG exposure distribution and ANC1 covariates and therefore will need to be updated when the GBD 2023 estimates are available. Verification and validation criteria ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ From c2dde6db4c3c1918a7f38c3aa2502af132f53a5d Mon Sep 17 00:00:00 2001 From: Alix Pletcher Date: Wed, 13 Aug 2025 09:10:47 -0700 Subject: [PATCH 6/7] Update links --- .../mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst b/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst index 7869a20962..d8b96b2ab8 100644 --- a/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst +++ b/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst @@ -387,7 +387,7 @@ Additionally, our methods differ from GBD's in that we estimated two separate GA 2. Find and apply a second shift that replicates the preterm birth dichotomous effect when applied only to the portion of the distribution with baseline gestational age exposures that are *greater* than 32 (the very preterm birth threshold) *minus* this second shift. Note that the second shift will be negative in direction. -`The estimation of the antenatal supplementation gestational age shifts as described was performed in this notebook `_ +`The estimation of the antenatal supplementation gestational age shifts as described was performed in this notebook `_ Assumptions and limitations ~~~~~~~~~~~~~~~~~~~~~~~~~~~ From f2300041f05aa36387d3815adf28add0c3028e50 Mon Sep 17 00:00:00 2001 From: Alix Pletcher Date: Wed, 13 Aug 2025 14:02:47 -0700 Subject: [PATCH 7/7] Update links --- .../oral_iron_antenatal/oral_iron_antenatal.rst | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst b/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst index d8b96b2ab8..cac784484d 100644 --- a/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst +++ b/docs/source/models/intervention_models/mncnh_pregnancy/oral_iron_antenatal/oral_iron_antenatal.rst @@ -387,7 +387,7 @@ Additionally, our methods differ from GBD's in that we estimated two separate GA 2. Find and apply a second shift that replicates the preterm birth dichotomous effect when applied only to the portion of the distribution with baseline gestational age exposures that are *greater* than 32 (the very preterm birth threshold) *minus* this second shift. Note that the second shift will be negative in direction. -`The estimation of the antenatal supplementation gestational age shifts as described was performed in this notebook `_ +`The estimation of the antenatal supplementation gestational age shifts as described was performed in this notebook `_ Assumptions and limitations ~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -465,11 +465,11 @@ Where, * - Parameter - Value * - IFA_SHIFT - - `Location-specific IFA_SHIFT values can be found here `_ + - `Location-specific IFA_SHIFT values can be found here `_ * - MMS_SHIFT_1 - - `Location-specific .csv files of MMS_SHIFT_1 values can be found here `_ + - `Location-specific .csv files of MMS_SHIFT_1 values can be found here `_ * - MMS_SHIFT_2 - - `Location-specific .csv files of MMS_SHIFT_2 values can be found here `_ + - `Location-specific .csv files of MMS_SHIFT_2 values can be found here `_ .. todo::