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cellprofiler
cellprofiler
 
 
doc-images
doc-images
 
 
examples
examples
 
 
sample-data
sample-data
 
 
01-Starting-PyImageJ.ipynb
01-Starting-PyImageJ.ipynb
 
 
02-Working-with-Java-classes-and-Python.ipynb
02-Working-with-Java-classes-and-Python.ipynb
 
 
03-Sending-Data-to-Java.ipynb
03-Sending-Data-to-Java.ipynb
 
 
04-Retrieving-Data-from-Java.ipynb
04-Retrieving-Data-from-Java.ipynb
 
 
05-Convenience-methods-of-PyImageJ.ipynb
05-Convenience-methods-of-PyImageJ.ipynb
 
 
06-Working-with-Images.ipynb
06-Working-with-Images.ipynb
 
 
07-Running-Macros-Scripts-and-Plugins.ipynb
07-Running-Macros-Scripts-and-Plugins.ipynb
 
 
08-Discover-and-run-ImageJ-commands.ipynb
08-Discover-and-run-ImageJ-commands.ipynb
 
 
09-Working-with-Large-Images.ipynb
09-Working-with-Large-Images.ipynb
 
 
10-Using-ImageJ-Ops.ipynb
10-Using-ImageJ-Ops.ipynb
 
 
11-Working-with-the-original-ImageJ.ipynb
11-Working-with-the-original-ImageJ.ipynb
 
 
12-Troubleshooting.ipynb
12-Troubleshooting.ipynb
 
 
Cellpose-StarDist-Segmentation.ipynb
Cellpose-StarDist-Segmentation.ipynb
 
 
Classic-Segmentation.ipynb
Classic-Segmentation.ipynb
 
 
Deconvolution.ipynb
Deconvolution.ipynb
 
 
Development.md
Development.md
 
 
GLCM.ipynb
GLCM.ipynb
 
 
Headless.md
Headless.md
 
 
Initialization.md
Initialization.md
 
 
Install.md
Install.md
 
 
Makefile
Makefile
 
 
Puncta-Segmentation.ipynb
Puncta-Segmentation.ipynb
 
 
README.md
README.md
 
 
Troubleshooting.md
Troubleshooting.md
 
 
api.rst
api.rst
 
 
conf.py
conf.py
 
 
imagej-ops-use-cases.rst
imagej-ops-use-cases.rst
 
 
index.rst
index.rst
 
 
integration-use-cases.rst
integration-use-cases.rst
 
 
make.bat
make.bat
 
 
notebooks.rst
notebooks.rst
 
 
other_use_cases.rst
other_use_cases.rst
 
 
requirements.txt
requirements.txt
 
 
segmentation-use-cases.rst
segmentation-use-cases.rst
 
 

README.md

PyImageJ Reference Documentation

To access PyImageJ's installation, initialization, tutorial, troubleshooting and API reference documentation please visit the PyImageJ ReadTheDocs website or build the documentation locally (see building the reference documentation for more details).