The image voxel volume viewer (pronounced ivy).
ivvv is an attempt to provide a lightweight, minimal volume viewer for interactive data exploration in jupyter. (This is a jupyter widget that provide volumetric rendering given a multiple channel zstack as a numpy array.)
~We wanna look at stuff in notebooks~ Most 3D viewers are too heavyweight to use for quick visualization tasks when experimenting with tractably-sized (analyzing, checking, ...) 3D volumetric datasets.
We've used a stripped down version of 3D rendering provided by the Allen Cell Explorer’s 3D Cell Viewer.
pip install ivvv
jupyter nbextension install --py ivvv
jupyter nbextension enable ivvv --py