update prepare_data.py

Author: robinredX

dissect/prepare_data.py

@@ -132,11 +132,11 @@ def dataset(config):
 
     else:
         X_sim = simulate(X_sc, config["deconv_params"]["simulation_params"])
-    if "parse" in str(type(X_sim.X)):
-        X_sim.X = np.array(X_sim.X.todense())
     # Normalization
     if config["deconv_params"]["normalize_simulated"] == "cpm":
         sc.pp.normalize_total(X_sim, target_sum=1e6)
+    if "parse" in str(type(X_sim.X)):
+        X_sim.X = np.array(X_sim.X.todense())
     elif not config["deconv_params"]["normalize_simulated"]:
         pass
     else: