Seumetry/NAMESPACE at main · imsb-uke/Seumetry · GitHub

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# Generated by roxygen2: do not edit by hand

export(DE_pseudobulk)
export(bead_norm)
export(compensate_data)
export(convert_seurat)
export(create_flowset)
export(create_seurat)
export(detect_aggregate_channels)
export(detect_aggregates)
export(detect_outliers)
export(differential_abundance)
export(export_fcs)
export(median_expression)
export(plot_cellnumber)
export(plot_cyto)
export(plot_frequency)
export(plot_pca)
export(remove_outliers_manual)
export(run_FlowSOM)
export(run_modified_ransac)
export(transform_arcsinh)
export(transform_biexp)
export(transform_data)
import(Seurat)
import(ggplot2)
importFrom(Biobase,AnnotatedDataFrame)
importFrom(CATALYST,normCytof)
importFrom(FlowSOM,BuildSOM)
importFrom(FlowSOM,GetClusters)
importFrom(FlowSOM,GetMetaclusters)
importFrom(FlowSOM,ReadInput)
importFrom(FlowSOM,metaClustering_consensus)
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,counts)
importFrom(edgeR,DGEList)
importFrom(edgeR,estimateDisp)
importFrom(edgeR,glmFit)
importFrom(edgeR,glmLRT)
importFrom(edgeR,topTags)
importFrom(flowCore,"identifier<-")
importFrom(flowCore,compensate)
importFrom(flowCore,compensation)
importFrom(flowCore,exprs)
importFrom(flowCore,flowFrame)
importFrom(flowCore,flowSet)
importFrom(flowCore,fsApply)
importFrom(flowCore,read.flowSet)
importFrom(flowCore,spillover)
importFrom(flowCore,write.FCS)
importFrom(flowWorkspace,flowjo_biexp)
importFrom(isotree,isolation.forest)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,topTable)