Fix failed readthedocs build

Author: fhausmann

.readthedocs.yml

@@ -20,3 +20,5 @@ python:
   install:
     - method: pip
       path: .
+      extra_requirements:
+        - doc

doc/source/api.rst

@@ -3,71 +3,71 @@
 API
 ===
 
-scWAE
------
+DISCERN
+-------
 
-.. automodule:: scwae
+.. automodule:: discern
    :members:
    :inherited-members:
 
-Batch correction functions
---------------------------
+Reconstruction functions
+------------------------
 
-.. automodule:: scwae.estimators
+.. automodule:: discern.estimators
    :members:
    :inherited-members:
 
-.. automodule:: scwae.estimators.batch_integration
+.. automodule:: discern.estimators.batch_integration
    :members:
    :inherited-members:
 
-.. automodule:: scwae.estimators.callbacks
+.. automodule:: discern.estimators.callbacks
    :members:
    :inherited-members:
 
-.. automodule:: scwae.estimators.customlayers
+.. automodule:: discern.estimators.customlayers
    :members:
 
-.. automodule:: scwae.estimators.losses
+.. automodule:: discern.estimators.losses
    :members:
    :inherited-members:
 
-.. automodule:: scwae.estimators.run_exp
+.. automodule:: discern.estimators.run_exp
    :members:
    :inherited-members:
 
-.. automodule:: scwae.estimators.utilities_wae
+.. automodule:: discern.estimators.utilities_wae
    :members:
    :inherited-members:
 
 I/O functions
 -------------
 
-.. automodule:: scwae.io
+.. automodule:: discern.io
    :members:
 
 Preprocessing functions
 -----------------------
 
 
-.. automodule:: scwae.preprocessing
+.. automodule:: discern.preprocessing
    :members:
    :inherited-members:
 
 Online/Incremental learning
 ---------------------------
 
-.. automodule:: scwae.online_learning
+.. automodule:: discern.online_learning
    :members:
    :inherited-members:
 
 Other functions
 ---------------
 
-.. automodule:: scwae.functions
+.. automodule:: discern.functions
    :members:
    :inherited-members:
 
-.. automodule:: scwae.mmd
+.. automodule:: discern.mmd
    :members:
    :inherited-members:

doc/source/conf.py

@@ -10,13 +10,14 @@
 # add these directories to sys.path here. If the directory is relative to the
 # documentation root, use os.path.abspath to make it absolute, like shown here.
 #
-import os
+import pathlib
 import sys
-sys.path.insert(0, os.path.abspath('../..'))
+rootpath = pathlib.Path(__file__).parents[2].resolve()
+sys.path.insert(0, rootpath.as_posix())
 import sphinx_rtd_theme
 import toml
 
-with open("../../pyproject.toml") as file:
+with rootpath.joinpath("pyproject.toml").open("r") as file:
     args = toml.load(file)["tool"]["poetry"]
 
 

doc/source/index.rst

@@ -4,7 +4,7 @@
    contain the root `toctree` directive.
 
 Welcome to DISCERN's documentation!
-=================================
+===================================
 
 .. toctree::
    :maxdepth: 2

poetry.lock

@@ -25,6 +25,7 @@ joblib = "^1.0.1"
 click = "^7.1.2"
 Sphinx = {version = "^4.1.1", optional = true}
 sphinx-rtd-theme = {version = "^0.5.2", optional = true}
+toml = {version =  "^0.10.2", optional = true}
 
 [tool.poetry.dev-dependencies]
 ray = {extras = ["debug"], version = ">=1.6.0,<1.7.0"}
@@ -42,7 +43,7 @@ rstcheck = {version = "^3.3.1", optional = true}
 
 [tool.poetry.extras]
 jupyter = ["ipykernel"]
-doc = ["Sphinx", "rstcheck","sphinx_rtd_theme"]
+doc = ["Sphinx", "rstcheck","sphinx_rtd_theme","toml"]
 
 [tool.poetry.scripts]
 merge_parameter = "discern._scripts.merge_parameters:main"
@@ -51,7 +52,7 @@ discern =  "discern.__main__:main"
 [tool.pylint.messages_control]
 disable = "import-error"
 [build-system]
-requires = ["poetry_core>=1.0.0","Cython", "numpy<1.20.0"]
+requires = ["poetry_core>=1.0.0","Cython", "numpy<1.20.0","setuptools"]
 build-backend = "poetry.core.masonry.api"
 
 [tool.vulture]