research-software-etl/docker-compose.yml at main · inab/research-software-etl · GitHub

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# Example of full workflow orchestration

services:
  toolshed-importer:
    image: toolshed-importer:latest
    # build:
    #   context: ./toolshed-importer
    #   dockerfile: Dockerfile
    command: ["python", "main.py"]
    env_file:
      - ./toolshed-importer/.env
    volumes:
      - ./data:/app/data
    restart: "no"

  sourceforge-importer:
    image: sourceforge-importer:latest
    # build:
    #   context: ./sourceforge-importer
    #   dockerfile: Dockerfile
    command: ["python", "main.py"]
    env_file:
      - ./sourceforge-importer/.env
    volumes:
      - ./data:/app/data
    restart: "no"

  oeb-tools-importer:
    image: oeb-tools-importer:latest
    # build:
    #   context: ./oeb-tools-importer
    #   dockerfile: Dockerfile
    command: ["python", "main.py"]
    env_file:
      - ./oeb-tools-importer/.env
    volumes:
      - ./data:/app/data
    restart: "no"

  oeb-metrics-importer:
    image: oeb-metrics-importer:latest
    # build:
    #   context: ./oeb-metrics-importer
    #   dockerfile: Dockerfile
    command: ["python", "main.py"]
    env_file:
      - ./oeb-metrics-importer/.env
    volumes:
      - ./data:/app/data
    restart: "no"

  bioconductor-importer:
    image: bioconductor-importer:latest
    # build:
    #   context: ./bioconductor-importer
    #   dockerfile: Dockerfile
    command: ["python", "main.py"]
    env_file:
      - ./bioconductor-importer/.env
    volumes:
      - ./data:/app/data
    restart: "no"

  bioconda-importer:
    image: bioconda-importer:latest
    # build:
    #   context: ./bioconda-importer
    #   dockerfile: Dockerfile
    command: ["python", "main.py"]
    env_file:
      - ./bioconda-importer/.env
    volumes:
      - ./data:/app/data
    restart: "no"

  rsetl-transformation:
    image: rsetl:latest
    # build:
    #   context: ./rsetl
    #   dockerfile: Dockerfile
    command: ["run-transformation"]
    env_file:
      - ./rsetl/.env
    volumes:
      - ./data:/app/data
    restart: "no"
    depends_on:
      toolshed-importer:
        condition: service_completed_successfully
      sourceforge-importer:
        condition: service_completed_successfully
      oeb-tools-importer:
        condition: service_completed_successfully
      oeb-metrics-importer:
        condition: service_completed_successfully
      bioconductor-importer:
        condition: service_completed_successfully
      bioconda-importer:
        condition: service_completed_successfully

  github-importer:
    image: github-importer:latest
    # build:
    #   context: ./github-importer
    #   dockerfile: Dockerfile
    command: ["python", "main.py"]
    env_file:
      - ./github-importer/.env
    volumes:
      - ./data:/app/data
    restart: "no"
    depends_on:
      rsetl-transformation:
        condition: service_completed_successfully

  rsetl-full:
    image: rsetl:latest
    # build:
    #   context: ./rsetl
    #   dockerfile: Dockerfile
    command: ["run"]
    env_file:
      - ./rsetl/.env
    volumes:
      - ./data:/app/data
    restart: "no"
    depends_on:
      github-importer:
        condition: service_completed_successfully