This issue was created automatically by the metadata disambiguation pipeline because the associated block could not be resolved with high confidence.
Conflict Id: p:pecora/lib
Conflict File: https://github.com/inab/research-software-etl/blob/pair_wise_cache/human_annotations/conflicts/p:pecora/lib.json
Run Id: 20260205T170527Z-8c2d90e-test_9_0
A conflict has been detected between two software metadata entries with the same name but no shared repository or website. Please review the metadata and provide your decision using the format below.
Annotation Guidelines: refer to the annotation guidelines if needed.
Entry A - pecora
- Name: pecora
- ID: bioconductor/pecora/lib/0.99.9
- Source: bioconductor
- Version: None
- Type: None
- Repository:
- Website:
- Authors:
- Publications: No publications listed.
- License: No license information.
- Documentation: No documentation available.
- Description:
The PeCorA package detects quantitative disagreements between peptides mapped to the same protein. It initially format the output of proteomics processing tools such as MaxQuant into an adecuate format for the PeCorA algorithm. This algorithm fits linear models to assess whether the slope of a peptide’s change across treatment groups differs from the slope of all other peptides assigned to the same protein. Finally, visualization tools are provided to explore resulting discordant peptides, including boxplots.
Entry B - pecora
- Name: pecora
- ID: biotools/pecora/lib/None
- Source: biotools
- Version: None
- Type: None
- Repository:
- Website:
- Authors:
- Publications: No publications listed.
- License: No license information.
- Documentation: No documentation available.
- Description:
PeCorA is short for "Peptide Correlation Analysis", which is an R package that enables detection of discordant peptide quantities in shotgun proteomics data. The package also contains a number of published proteomics datasets processed with different processing tools to demonstrate the workflow.
Peptide correlation analysis (PeCorA). Detection of Discordant Peptide Quantities in Shotgun Proteomics Data by Peptide Correlation Analysis (PeCorA).
```
Your Decision (in a code block below)
Use the exact format shown in a single comment, replacing the values as needed:
{
"decision": "same", // options: "same", "different", "unclear"
"explanation": "Brief explanation of your decision",
"confidence": "high" // options: "high", "medium", "low",
}
Thank you! Your annotation will be automatically ingested and logged.
A conflict has been detected between two software metadata entries with the same name but no shared repository or website. Please review the metadata and provide your decision using the format below.
Annotation Guidelines: refer to the annotation guidelines if needed.
Entry A - pecora
Entry B - pecora
Peptide correlation analysis (PeCorA). Detection of Discordant Peptide Quantities in Shotgun Proteomics Data by Peptide Correlation Analysis (PeCorA).
```
Your Decision (in a code block below)
Use the exact format shown in a single comment, replacing the values as needed:
{ "decision": "same", // options: "same", "different", "unclear" "explanation": "Brief explanation of your decision", "confidence": "high" // options: "high", "medium", "low", }Thank you! Your annotation will be automatically ingested and logged.