nlx_import.ttl

@prefix : <http://purl.org/nidash/nidm/nlx_import.owl#> .
@prefix nlx: <http://uri.neuinfo.org/nif/nifstd/> .
@prefix scr: <http://scicrunch.org/resolver/>.
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix BIRNLex-OBI-proxy: <http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#> .
@prefix obo_annot: <http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#> .
@prefix core: <http://www.w3.org/2004/02/skos/core#> .
@prefix birn_annot: <http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#> .

<http://purl.org/nidash/nidm/nlx_import.owl> rdf:type owl:Ontology .


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#    Annotation properties
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###  http://purl.obolibrary.org/obo/IAO_0000115

obo:IAO_0000115 rdf:type owl:AnnotationProperty .





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#    Classes
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###  http://neurolex.org/wiki/birnlex_2067

scr:SCR_002823 rdf:type owl:Class ;
                 
                 rdfs:label "FSL" ;
                 
                 obo:IAO_0000115 "A comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The tools include registration, atlases, Diffusion MRI tools for parameter reconstruction and probabilistic taractography, and a viewer. FSL runs on Apple and PCs (Linux and Windows), and is very easy to install. Most of the tools can be run both from the command line and as GUIs ('point-and-click' graphical user interfaces). Several complementary brain atlases, integrated into FSLView and Featquery, allowing viewing of structural and cytoarchitectonic standard space labels and probability maps for cortical and subcortical structures and white matter tracts. Atlases included with FSL: * Harvard-Oxford cortical and subcortical structural atlases * Julich histological atlas * JHU DTI-based white-matter atlases * Oxford thalamic connectivity atlas * Talairach atlas * MNI structural atlas * Cerebellum atlas FSL is written mainly by members of the Analysis Group, FMRIB, Oxford, UK." .



###  http://neurolex.org/wiki/nif-0000-00343

scr:SCR_007037 rdf:type owl:Class ;
                   
                   rdfs:label "SPM" ;
                   
                   obo:IAO_0000115 "Software package for the analysis of brain imaging data sequences. The sequences can be a series of images from different cohorts, or time-series from the same subject. The current release is designed for the analysis of fMRI, PET, SPECT, EEG and MEG." .

nlx:birnlex_2177 rdf:type owl:Class ;
              
              rdfs:label "MRI protocol"^^xsd:string ;
                                        
              core:definition """* MRI uses radiofrequency waves and a strong magnetic field rather than x-rays to provide amazingly clear and detailed pictures of internal organs and tissues. The technique is valuable for the diagnosis of many pathologic conditions, including cancer, heart and vascular disease, stroke, and joint and musculoskeletal disorders. (NCI)
* Non-invasive method of demonstrating internal anatomy based on the principle that atomic nuclei in a strong magnetic field absorb pulses of radiofrequency energy and emit them as radiowaves which can be reconstructed into computerized images. The concept includes proton spin tomographic techniques. (MSH)
* non-invasive method of demonstrating internal anatomy based on the principle that atomic nuclei in a strong magnetic field absorb pulses of radiofrequency energy and emit them as radiowaves which can be reconstructed into computerized images; concept includes proton spin tomographic techniques. (CSP)"""^^xsd:string ;
              
              obo_annot:createdDate "2007-03-07"^^xsd:string ;
              
              obo_annot:modifiedDate "2008-05-01"^^xsd:string ;
              
              obo_annot:tempDefinition "An imaging protocol where images are acquired using a Magnetic Resonance Imaging device."^^xsd:string ;
              
              obo_annot:UmlsCui "C0024485"^^xsd:string ;
              
              obo_annot:synonym "MRI"^^xsd:string ;
              
              core:prefLabel "MRI protocol"^^xsd:string ;
              
              obo_annot:nifID "_7_2.2"^^xsd:string ;
              
              birn_annot:hasBirnlexCurator "http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug"^^xsd:string ,
                                           "http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner"^^xsd:string ;
              
              birn_annot:hasCurationStatus "http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated"^^xsd:string ;
              
              obo_annot:hasDefinitionSource "http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource"^^xsd:string .     

###  http://uri.interlex.org/base/ixl_0050004

nlx:ixl_0050004 rdf:type owl:Class ;
                
                rdfs:label "Anatomical MRI protocol"^^xsd:string ;
                
                rdfs:subClassOf nlx:birnlex_2251 ;
                
                core:definition ""^^xsd:string ,
                                """
        An anatomical MRI protocol is a structural MRI protocol that can be used to delineate the anatomy, for example by the way of a segmentation or parcellation.
        """^^xsd:string ;
                
                obo_annot:createdDate "2016-02-15"^^xsd:string ;
                
                obo_annot:hasDefinitionSource "http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource"^^xsd:string .                              
 
nlx:birnlex_2250 rdf:type owl:Class ;
              
              rdfs:label "Functional MRI protocol"^^xsd:string ;
              
              rdfs:subClassOf nlx:birnlex_2177 ;
              
              owl:disjointWith nlx:birnlex_2251 ;
              
              obo_annot:createdDate "2007-10-09"^^xsd:string ;
              
              obo_annot:modifiedDate "2007-10-09"^^xsd:string ;
              
              core:prefLabel "Functional MRI protocol"^^xsd:string ;
              
              obo_annot:nifID "_7_2.2.2"^^xsd:string ;
              
              obo_annot:synonym "fMRI"^^xsd:string ;
              
              birn_annot:hasBirnlexCurator "http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug"^^xsd:string ;
              
              birn_annot:hasCurationStatus "http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated"^^xsd:string .                    
###  http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#nlx_inv_20090249

nlx:nlx_inv_20090249 rdf:type owl:Class ;
                  
                  rdfs:label "Diffusion-weighted imaging protocol"^^xsd:string ;
                  
                  rdfs:subClassOf nlx:birnlex_2251 ;
                  
                  core:definition "A magnetic resonance imaging protocol that is sensitive to the diffusion of water molecules."^^xsd:string ;
                  
                  core:prefLabel "Diffusion-weighted imaging protocol"^^xsd:string ;
                  
                  obo_annot:createdDate "February 9, 2009"^^xsd:string ;
                  
                  obo_annot:externalSourceId "UMLS, C1136216"^^xsd:string .  


###  http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2251

nlx:birnlex_2251 rdf:type owl:Class ;
              
              rdfs:label "Structural MRI protocol"^^xsd:string ;
              
              rdfs:subClassOf nlx:birnlex_2177 ;
              
              obo_annot:modifiedDate "2007-10-09"^^xsd:string ;
              
              obo_annot:createdDate "2007-10-09"^^xsd:string ;
              
              core:definition "A structural MRI protocol is an MRI protocol that provides information to qualitatively and quantitatively describe the shape, size, and integrity of gray and white matter structures in the brain."^^xsd:string ;
              
              obo_annot:synonym "MRI"^^xsd:string ;
              
              core:prefLabel "Structural MRI protocol"^^xsd:string ;
              
              obo_annot:nifID "_7_2.2.1"^^xsd:string ;
              
              obo_annot:definingCitationURI "http://fmri.ucsd.edu/Research/whatisfmri.html"^^xsd:string ;
              
              birn_annot:hasBirnlexCurator "http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug"^^xsd:string ;
              
              birn_annot:hasCurationStatus "http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated"^^xsd:string .                          
                             

###  Generated by the OWL API (version 3.5.0) http://owlapi.sourceforge.net



###  http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2100

nlx:birnlex_2100 rdf:type owl:Class ;
              
              rdfs:label "Magnetic resonance imaging scanner"^^xsd:string ;
              
              rdfs:subClassOf nlx:birnlex_2094 ;
              
              obo_annot:createdDate "2006-05-15"^^xsd:string ;
              
              obo_annot:modifiedDate "2006-10-11"^^xsd:string ;
              
              obo_annot:synonym "MRI scanner"^^xsd:string ;
              
              core:prefLabel "Magnetic resonance imaging scanner"^^xsd:string ;
              
              birn_annot:hasBirnlexCurator "http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF"^^xsd:string ;
              
              birn_annot:hasCurationStatus "http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated"^^xsd:string .

###  http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2094

nlx:birnlex_2094 rdf:type owl:Class ;
              
              rdfs:label "Imaging instrument"^^xsd:string ;
                           
              obo_annot:createdDate "2006-05-15"^^xsd:string ;
              
              obo_annot:modifiedDate "2006-10-11"^^xsd:string ;
              
              core:prefLabel "Imaging instrument"^^xsd:string ;
              
              birn_annot:hasBirnlexCurator "http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF"^^xsd:string ;
              
              birn_annot:hasCurationStatus "http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated"^^xsd:string .              

###  http://uri.interlex.org/base/ixl_0050000

nlx:ixl_0050000 rdf:type owl:Class ;
                
                rdfs:label "Positron emission tomography scanner"^^xsd:string ;
                
                rdfs:subClassOf nlx:birnlex_2094 ;
                
                obo_annot:createdDate "2016-02-12"^^xsd:string ;
                
                core:definition "A Positron emission tomography scanner is a device used in a nuclear medicine to observe metabolic processes in the body."^^xsd:string ;
                
                obo_annot:synonym "PET scanner"^^xsd:string ;
                
                core:prefLabel "Positron emission tomography scanner"^^xsd:string ;
                
                obo_annot:definingCitationURI "https://en.wikipedia.org/wiki/Positron_emission_tomography"^^xsd:string .

###  http://uri.interlex.org/base/ixl_0050001
nlx:ixl_0050001 rdf:type owl:Class ;
                
                rdfs:label "Single-photon emission computed tomography scanner"^^xsd:string ;
                
                rdfs:subClassOf nlx:birnlex_2094 ;
                
                obo_annot:createdDate "2016-02-12"^^xsd:string ;
                
                core:definition "A Single-photon emission computed tomography scanner is a device used in nuclear medicine tomographic imaging to measure perfusion in the body using gamma rays."^^xsd:string ;
                
                obo_annot:synonym "SPECT scanner"^^xsd:string ;
                
                core:prefLabel "Single-photon emission computed tomography scanner"^^xsd:string ;
                
                obo_annot:definingCitationURI "https://en.wikipedia.org/wiki/Single-photon_emission_computed_tomography"^^xsd:string .


###  http://uri.interlex.org/base/ixl_0050003

nlx:ixl_0050003 rdf:type owl:Class ;
                
                rdfs:label "Electroencephalography machine"^^xsd:string ;
                
                rdfs:subClassOf nlx:birnlex_2094 ;
                
                obo_annot:createdDate "2016-02-12"^^xsd:string ;
                
                core:definition "A Electroencephalography machine is a device used in electrophysiology to record electrical activity of the brain.."^^xsd:string ;
                
                obo_annot:synonym "EEG machine"^^xsd:string ;
                
                core:prefLabel "Electroencephalography machine"^^xsd:string ;
                
                obo_annot:definingCitationURI "https://en.wikipedia.org/wiki/Electroencephalography"^^xsd:string .

###  http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_XXX_MEG_machine

nlx:ixl_0050002 rdf:type owl:Class ;
                
                rdfs:label "Magnetoencephalography machine"^^xsd:string ;
                
                rdfs:subClassOf nlx:birnlex_2094 ;
                
                obo_annot:createdDate "2016-02-12"^^xsd:string ;
                
                core:definition "A Magnetoencephalography machine is a device used in functional neuroimaging for mapping brain activity by recording magnetic fields produced by electrical currents occurring naturally in the brain, using very sensitive magnetometers.."^^xsd:string ;
                
                obo_annot:synonym "MEG machine"^^xsd:string ;
                
                core:prefLabel "Magnetoencephalography machine"^^xsd:string ;
                
                obo_annot:definingCitationURI "https://en.wikipedia.org/wiki/Magnetoencephalography"^^xsd:string .