If possible, priority should be given to uncurated terms (in red).
Thank you in advance for taking part in NIDM-Results term curation!
Curation status:
Pending final vetting;
Metadata incomplete; Metadata complete; Requires discussion;
Uncurated;
To be replaced with external ontology term;
| Curation Status | Issue/PR | Term |
|---|---|---|
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Discussed in #235 [find issues/PR] |
nidm:'Contrast Explained Mean Square Map': A map whose value at each element (e.g., pixel, voxel, vertex, or face) is the extra sum of squares divided by the 'effect Degrees of Freedom' (i.e. the numerator of an F-statistic) |
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Under discussion at #290 [more] |
nidm:'Coordinate Space': An entity with spatial attributes (e.g., dimensions, units, and voxel-to-world mapping) that provides context to a 'Map' (e.g., a 'Statistic Map', a 'Contrast Map'...) |
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[find issues/PR] | nidm:'Threshold': A numerical value that establishes a bound on a set of statistic values and can be specified by the user in terms of FWER-corrected p-value, uncorrected p-value, FDR-corrected q-value or statistic value |
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Discussed at #281 [find issues/PR] |
afni:BLOCK: <undefined> |
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Discussed at #281 [find issues/PR] |
nidm:'Convolution Basis Set': <undefined> |
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Discussed at ... [find issues/PR] |
nidm:'Data': Information about the input Data, including scaling applied to the data before parameter estimation. |
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[find issues/PR] | nidm:'NIDM-Results Export': The process of exporting results created by a neuroimaging software (SPM, FSL, AFNI...) into a NIDM-Results archive |
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[find issues/PR] | nidm:'NIDM-Results Exporter': Tool used to export results produced by a neuroimaging software (SPM, FSL, AFNI...) into a NIDM-Results archive |
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[find issues/PR] | nidm:'Neuroimaging Analysis Software': Tool used to process neuroimaging data |
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[find issues/PR] | nidm:'nidmfsl': Python library for the export of feat folders (generated by FSL) to NIDM-Results. Source available at: https://github.com/incf-nidash/nidm-results_fsl/ |
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[find issues/PR] | nidm:'spm_results_nidm': Matlab m file for the export of SPM results to NIDM-Results. Source available at: http://www.fil.ion.ucl.ac.uk/spm/download/toolbox/NIDM/spm_nidm.zip/ |
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Under discussion at ISA-tools/stato#28 [more] |
nidm:'Exchangeable Error': <undefined> (editor: TN) |
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Under discussion at ISA-tools/stato#28 [more] |
nidm:'Independent Error': <undefined> (editor: TN) |
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Under discussion at ISA-tools/stato#28 [more] |
nidm:'deprecated Arbitrarily Correlated Error': <undefined> (editor: TN) |
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Discussed at #284 [find issues/PR] |
nidm:'Standardized Coordinate System': Parent of all reference spaces except "Subject" |
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Discussed at #284 [find issues/PR] |
nidm:'Subject Coordinate System': Reference space corresponding to the subject brain (no spatial normalization applied) |
| Curation Status | Issue/PR | Term | Domain | Range |
|---|---|---|---|---|
| |
Under discussion at: #270 and #145 [more] |
nidm:'coordinate Vector': A vector with one number per dimension. The first element corresponds to the 'Coordinate' along the first dimension measured in map elements (e.g., pixels, voxels, vertices, or faces), the second element to the 'Coordinate' along the second dimension etc | nidm:NIDM_0000015 | xsd:string |
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Under discussion at #277 [more] |
nidm:'effect Degrees Of Freedom': In the context of a general linear model, the effect degrees of freedom is the rank of the contrast. For example, a contrast comprising of a vector has effect degrees of freedom of 1 and can be tested with a F-test with numerator degrees of freedom of 1 | nidm:NIDM_0000076 | |
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Discussed in #329 [find issues/PR] |
nidm:'equivalent Threshold': Property that associates another 'Threshold' that is equivalent (e.g. if the user specified a 'Threshold' in terms of FWE-corrected p-value, this property can be used to associate the corresponding uncorrected p-value) | nidm:NIDM_0000162 | nidm:NIDM_0000162 |
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Under discussion at #277 [more] |
nidm:'error Degrees Of Freedom': In the context of a general linear model, the error degrees of freedom are the number of observations less the rank of the 'Design Matrix' | nidm:NIDM_0000076 | |
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[find issues/PR] | nidm:'expected Number Of Clusters': Expected number of clusters in an excursion set under the null hypothesis | nidm:NIDM_0000068 | |
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[find issues/PR] | nidm:'expected Number Of Vertices Per Cluster': Expected number of vertices in a cluster under the null hypothesis | nidm:NIDM_0000068 | |
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[find issues/PR] | nidm:'expected Number Of Voxels Per Cluster': Expected number of voxels in a cluster under the null hypothesis | nidm:NIDM_0000068 | |
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[find issues/PR] | nidm:'group Name': Name of the group | obo:STATO_0000193 | xsd:string |
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[find issues/PR] | nidm:'has MRI Protocol': 'MRI Protocol' used to acquire these 'Data' | nidm:NIDM_0000169 | nlx:birnlex_2177 |
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Linked with http://purl.obolibrary.org/obo/STATO_0000088 to be discussed. [find issues/PR] |
nidm:'number Of Subjects': Number of subjects in the group | obo:STATO_0000193 | xsd:int |
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Under discussion at #137 [more] |
nidm:'object Model': <undefined> | prov:Bundle | nidm:NIDM_0000057 |
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[find issues/PR] | nidm:'search Volume In Voxels': Total number of voxels within the search volume | nidm:NIDM_0000068 | xsd:positiveInteger |
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Discussed at #137 [find issues/PR] |
nidm:'version': Version of NIDM in use in the document | nidm:NIDM_0000057 | xsd:string |
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Under discussion at ISA-tools/stato#38 [more] |
nidm:'p Value FWER': "A quantitative confidence value resulting from a multiple testing error correction method which adjusts the p-value used as input to control for Type I error in the context of multiple pairwise tests"(same as: This definition is from OBI. Please update this note if the definition is modified.) | nidm:NIDM_0000062 nidm:NIDM_0000070 | |
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Under discussion at ISA-tools/stato#38 [more] |
nidm:'p Value Uncorrected': A p-value reported without correction for multiple testing. | nidm:NIDM_0000062 nidm:NIDM_0000070 | |
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[find issues/PR] | nidm:'cluster Size In Vertices': Number of vertices that make up the cluster | nidm:NIDM_0000026 nidm:NIDM_0000070 | xsd:positiveInteger |
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[find issues/PR] | nidm:'contrast Name': Name of the contrast | obo:STATO_0000323 nidm:NIDM_0000002 nidm:NIDM_0000076 | xsd:string |
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Under discussion at: #270 [more] |
nidm:'coordinate Vector In Voxels': Coordinate along the first dimension in voxels. (This definition needs to be re-worked as this term was renamed from coordinate1 to coordinate in #270) | nidm:NIDM_0000015 | xsd:string |
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[find issues/PR] | nidm:'equivalent ZStatistic': Statistic value transformed into Z units; the output of a process which takes a non-normal statistic and transforms it to an equivalent z score | nidm:NIDM_0000062 | xsd:float |
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[find issues/PR] | nidm:'search Volume In Vertices': Total number of vertices within the search volume | nidm:NIDM_0000068 |
| Curation Status | Issue/PR | Term | Type |
|---|---|---|---|
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[find issues/PR] | nidm:NumberOfSubjectsReification: <undefined> | prv:PropertyReification |