diff --git a/spm_non_sphericity/batch.m b/spm_non_sphericity/batch.m index 81fe115..08a0d07 100644 --- a/spm_non_sphericity/batch.m +++ b/spm_non_sphericity/batch.m @@ -1,6 +1,6 @@ %----------------------------------------------------------------------- -% Job saved on 08-Dec-2015 10:52:04 by cfg_util (rev $Rev: 6460 $) -% spm SPM - SPM12 (6470) +% Job saved on 04-Jul-2016 11:13:21 by cfg_util (rev $Rev: 6460 $) +% spm SPM - SPM12 (6685) % cfg_basicio BasicIO - Unknown %----------------------------------------------------------------------- matlabbatch{1}.spm.stats.factorial_design.dir = {'/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Group/Informed'}; @@ -13,58 +13,58 @@ matlabbatch{1}.spm.stats.factorial_design.des.fd.icell(1).levels = 1; %% matlabbatch{1}.spm.stats.factorial_design.des.fd.icell(1).scans = { - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub01/CanonicalHRF/con_0001.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub02/CanonicalHRF/con_0001.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub03/CanonicalHRF/con_0001.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub04/CanonicalHRF/con_0001.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub05/CanonicalHRF/con_0001.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub06/CanonicalHRF/con_0001.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub07/CanonicalHRF/con_0001.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub08/CanonicalHRF/con_0001.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub09/CanonicalHRF/con_0001.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub10/CanonicalHRF/con_0001.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub11/CanonicalHRF/con_0001.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub12/CanonicalHRF/con_0001.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub13/CanonicalHRF/con_0001.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub14/CanonicalHRF/con_0001.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub01_con0001.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub02_con0001.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub03_con0001.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub04_con0001.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub05_con0001.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub06_con0001.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub07_con0001.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub08_con0001.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub09_con0001.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub10_con0001.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub11_con0001.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub12_con0001.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub13_con0001.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub14_con0001.nii,1' }; %% matlabbatch{1}.spm.stats.factorial_design.des.fd.icell(2).levels = 2; %% matlabbatch{1}.spm.stats.factorial_design.des.fd.icell(2).scans = { - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub01/CanonicalHRF/con_0005.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub02/CanonicalHRF/con_0005.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub03/CanonicalHRF/con_0005.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub04/CanonicalHRF/con_0005.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub05/CanonicalHRF/con_0005.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub06/CanonicalHRF/con_0005.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub07/CanonicalHRF/con_0005.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub08/CanonicalHRF/con_0005.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub09/CanonicalHRF/con_0005.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub10/CanonicalHRF/con_0005.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub11/CanonicalHRF/con_0005.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub12/CanonicalHRF/con_0005.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub13/CanonicalHRF/con_0005.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub14/CanonicalHRF/con_0005.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub01_con0005.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub02_con0005.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub03_con0005.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub04_con0005.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub05_con0005.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub06_con0005.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub07_con0005.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub08_con0005.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub09_con0005.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub10_con0005.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub11_con0005.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub12_con0005.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub13_con0005.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub14_con0005.nii,1' }; %% matlabbatch{1}.spm.stats.factorial_design.des.fd.icell(3).levels = 3; %% matlabbatch{1}.spm.stats.factorial_design.des.fd.icell(3).scans = { - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub01/CanonicalHRF/con_0009.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub02/CanonicalHRF/con_0009.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub03/CanonicalHRF/con_0009.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub04/CanonicalHRF/con_0009.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub05/CanonicalHRF/con_0009.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub06/CanonicalHRF/con_0009.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub07/CanonicalHRF/con_0009.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub08/CanonicalHRF/con_0009.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub09/CanonicalHRF/con_0009.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub10/CanonicalHRF/con_0009.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub11/CanonicalHRF/con_0009.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub12/CanonicalHRF/con_0009.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub13/CanonicalHRF/con_0009.nii,1' - '/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub14/CanonicalHRF/con_0009.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub01_con0009.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub02_con0009.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub03_con0009.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub04_con0009.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub05_con0009.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub06_con0009.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub07_con0009.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub08_con0009.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub09_con0009.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub10_con0009.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub11_con0009.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub12_con0009.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub13_con0009.nii,1' + '/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_non_sphericity/input/sub14_con0009.nii,1' }; %% matlabbatch{1}.spm.stats.factorial_design.des.fd.contrasts = 1; @@ -90,6 +90,7 @@ matlabbatch{4}.spm.stats.results.conspec.threshdesc = 'none'; matlabbatch{4}.spm.stats.results.conspec.thresh = 0.001; matlabbatch{4}.spm.stats.results.conspec.extent = 0; +matlabbatch{4}.spm.stats.results.conspec.conjunction = 1; matlabbatch{4}.spm.stats.results.conspec.mask.none = 1; matlabbatch{4}.spm.stats.results.units = 1; matlabbatch{4}.spm.stats.results.print = 'pdf'; diff --git a/spm_non_sphericity/input/sub01_con0001.nii b/spm_non_sphericity/input/sub01_con0001.nii new file mode 100644 index 0000000..cf11ed8 --- /dev/null +++ b/spm_non_sphericity/input/sub01_con0001.nii @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0ef8d2a9231a17b529a674ce00694f37507585e457713c0333b78726676c5c12 +size 2371932 diff --git a/spm_non_sphericity/input/sub01_con0005.nii b/spm_non_sphericity/input/sub01_con0005.nii new file mode 100644 index 0000000..a62d428 --- /dev/null +++ b/spm_non_sphericity/input/sub01_con0005.nii @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bdd49c03a21b0e96cdaaa6d216ac09f80b362b95ad195e801fd16cfa1f558067 +size 2371932 diff --git a/spm_non_sphericity/input/sub01_con0009.nii b/spm_non_sphericity/input/sub01_con0009.nii new file mode 100644 index 0000000..1c34b1a --- /dev/null +++ b/spm_non_sphericity/input/sub01_con0009.nii @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4550cb0335fb45a4caa6dcb56ed7df48a7c86b3a1a53b9178f52c24e54a90760 +size 2371932 diff --git a/spm_non_sphericity/input/sub02_con0001.nii b/spm_non_sphericity/input/sub02_con0001.nii new file mode 100644 index 0000000..1ba16c6 --- /dev/null +++ b/spm_non_sphericity/input/sub02_con0001.nii @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:210570941d18167e0726754c1a54e77f71d88a519eaf26b0535dc56f56764c36 +size 2371932 diff --git a/spm_non_sphericity/input/sub02_con0005.nii b/spm_non_sphericity/input/sub02_con0005.nii new file mode 100644 index 0000000..8b27a9e --- /dev/null +++ b/spm_non_sphericity/input/sub02_con0005.nii @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:edfcb297b3cdfb0d2ac7b9b784610d2f0ff49b18aafb4afff18b2d7fd3bf04f3 +size 2371932 diff --git a/spm_non_sphericity/input/sub02_con0009.nii b/spm_non_sphericity/input/sub02_con0009.nii new file mode 100644 index 0000000..8bcbcbd --- /dev/null +++ b/spm_non_sphericity/input/sub02_con0009.nii @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6899d32879db46916685fe1b4e9f4c2bfd298b1f21b3807bcc8a482c8746ff68 +size 2371932 diff --git a/spm_non_sphericity/input/sub03_con0001.nii b/spm_non_sphericity/input/sub03_con0001.nii new file mode 100644 index 0000000..53b5498 --- /dev/null +++ b/spm_non_sphericity/input/sub03_con0001.nii @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e03daecd4a80989035c917da1142aec71d84a983a9a4122f4bf232cfbbc1e99a +size 2371932 diff --git a/spm_non_sphericity/input/sub03_con0005.nii b/spm_non_sphericity/input/sub03_con0005.nii new file mode 100644 index 0000000..d1fc111 --- /dev/null +++ b/spm_non_sphericity/input/sub03_con0005.nii @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:679da830bc2dd46492adec3eb03f552b7cb4e16a5f484972d9ca606f86354a8c +size 2371932 diff --git a/spm_non_sphericity/input/sub03_con0009.nii b/spm_non_sphericity/input/sub03_con0009.nii new file mode 100644 index 0000000..1668e9b --- /dev/null +++ b/spm_non_sphericity/input/sub03_con0009.nii @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8f729f2748a5ab70d0d9286d4ab7fd8deb1af2b80fa207f7a12038873d34d0ed +size 2371932 diff --git a/spm_non_sphericity/input/sub04_con0001.nii b/spm_non_sphericity/input/sub04_con0001.nii new file mode 100644 index 0000000..9a3cd32 --- /dev/null +++ b/spm_non_sphericity/input/sub04_con0001.nii @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cb55e8eedb4984bea1dead2d4002bfff733efd0302d8c05f83b8a98f3d70a743 +size 2371932 diff --git a/spm_non_sphericity/input/sub04_con0005.nii b/spm_non_sphericity/input/sub04_con0005.nii new file mode 100644 index 0000000..4ef797f --- /dev/null +++ b/spm_non_sphericity/input/sub04_con0005.nii @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:31eddc17c56042f9849338fdf8a6be584458be7d09c282ec9a3b641f5d67ab30 +size 2371932 diff --git a/spm_non_sphericity/input/sub04_con0009.nii b/spm_non_sphericity/input/sub04_con0009.nii new file mode 100644 index 0000000..f45829b --- /dev/null +++ b/spm_non_sphericity/input/sub04_con0009.nii @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:53a19065b9e12a1e9015b80c77f1eec72f3b4975bb6000503f5cef6f4e798bd0 +size 2371932 diff --git a/spm_non_sphericity/input/sub05_con0001.nii b/spm_non_sphericity/input/sub05_con0001.nii new file mode 100644 index 0000000..f30a5cc --- /dev/null +++ b/spm_non_sphericity/input/sub05_con0001.nii @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b7b587e47dd0fed9563fb7fb3f539f0d30ecaba37db5c985010b9f822792b6fd +size 2371932 diff --git a/spm_non_sphericity/input/sub05_con0005.nii b/spm_non_sphericity/input/sub05_con0005.nii new file mode 100644 index 0000000..c1f5419 --- /dev/null +++ b/spm_non_sphericity/input/sub05_con0005.nii @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e79520847f3dd8fa0e78853befa905ca45f1ad29c30052e67322481fc19eff23 +size 2371932 diff --git a/spm_non_sphericity/input/sub05_con0009.nii b/spm_non_sphericity/input/sub05_con0009.nii new file mode 100644 index 0000000..fb95ea5 --- /dev/null +++ b/spm_non_sphericity/input/sub05_con0009.nii @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:abbe8fb0f90c8bf7f507fbc68c6a460c848cc61fd320af9c35bcb9c944cdec24 +size 2371932 diff --git a/spm_non_sphericity/input/sub06_con0001.nii b/spm_non_sphericity/input/sub06_con0001.nii new file mode 100644 index 0000000..9024590 --- /dev/null +++ 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