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‎main/coverage-report/index.html‎

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@@ -107,8 +107,8 @@ <h2>hermes coverage - 88.85%</h2>
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</ul>
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<div class="tab-content" data-tabsetid="covr">
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<div class="tab-pane active" title="Files" data-value="Files" id="tab-covr-1">
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<div class="datatables html-widget html-fill-item" id="htmlwidget-c14c0376951ecc3e5f21" style="width:100%;height:500px;"></div>
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<script type="application/json" data-for="htmlwidget-02044a6daba29bd9ddad">{"x":{"filter":"none","vertical":false,"fillContainer":false,"data":[["<a href=\"#\">R/connections.R<\/a>","<a href=\"#\">R/dplyr_compatibility.R<\/a>","<a href=\"#\">R/draw_scatterplot.R<\/a>","<a href=\"#\">R/HermesData-class.R<\/a>","<a href=\"#\">R/draw_boxplot.R<\/a>","<a href=\"#\">R/assertthat.R<\/a>","<a href=\"#\">R/quality.R<\/a>","<a href=\"#\">R/differential.R<\/a>","<a href=\"#\">R/draw_heatmap.R<\/a>","<a href=\"#\">R/graphs.R<\/a>","<a href=\"#\">R/normalization.R<\/a>","<a href=\"#\">R/HermesData-methods.R<\/a>","<a href=\"#\">R/utils.R<\/a>","<a href=\"#\">R/GeneSpec-class.R<\/a>","<a href=\"#\">R/pca_cor_samplevar.R<\/a>","<a href=\"#\">R/HermesData-validate.R<\/a>","<a href=\"#\">R/top_genes.R<\/a>","<a href=\"#\">R/join_cdisc.R<\/a>","<a href=\"#\">R/draw_barplot.R<\/a>","<a href=\"#\">R/pca.R<\/a>","<a href=\"#\">R/calc_cor.R<\/a>","<a href=\"#\">R/checkmate.R<\/a>"],[383,38,96,168,159,151,270,297,82,272,275,940,393,211,243,122,141,103,97,95,120,59],[119,3,31,27,60,19,67,87,31,95,83,166,90,61,53,44,43,33,33,23,20,4],[15,2,27,24,55,18,64,84,30,92,81,166,90,61,53,44,43,33,33,23,20,4],[104,1,4,3,5,1,3,3,1,3,2,0,0,0,0,0,0,0,0,0,0,0],["0","1","1","48","1","186","10","5","1","3","24","5","12","19","67","73","10","3","1","9","4","47"],["12.61%","66.67%","87.10%","88.89%","91.67%","94.74%","95.52%","96.55%","96.77%","96.84%","97.59%","100.00%","100.00%","100.00%","100.00%","100.00%","100.00%","100.00%","100.00%","100.00%","100.00%","100.00%"]],"container":"<table class=\"row-border\">\n <thead>\n <tr>\n <th>File<\/th>\n <th>Lines<\/th>\n <th>Relevant<\/th>\n <th>Covered<\/th>\n <th>Missed<\/th>\n <th>Hits / Line<\/th>\n <th>Coverage<\/th>\n <\/tr>\n <\/thead>\n<\/table>","options":{"searching":false,"dom":"t","paging":false,"columnDefs":[{"targets":6,"createdCell":"function(td, cellData, rowData, row, col) {\n var percent = cellData.replace(\"%\", \"\");\n if (percent > 90) {\n var grad = \"linear-gradient(90deg, #edfde7 \" + cellData + \", white \" + cellData + \")\";\n } else if (percent > 75) {\n var grad = \"linear-gradient(90deg, #f9ffe5 \" + cellData + \", white \" + cellData + \")\";\n } else {\n var grad = \"linear-gradient(90deg, #fcece9 \" + cellData + \", white \" + cellData + \")\";\n }\n $(td).css(\"background\", grad);\n}\n"},{"className":"dt-right","targets":[1,2,3,4]},{"name":"File","targets":0},{"name":"Lines","targets":1},{"name":"Relevant","targets":2},{"name":"Covered","targets":3},{"name":"Missed","targets":4},{"name":"Hits / Line","targets":5},{"name":"Coverage","targets":6}],"order":[],"autoWidth":false,"orderClasses":false},"callback":"function(table) {\ntable.on('click.dt', 'a', function() {\n files = $('div#files div');\n files.not('div.hidden').addClass('hidden');\n id = $(this).text();\n files.filter('div[id=\\'' + id + '\\']').removeClass('hidden');\n $('ul.nav a[data-value=Source]').text(id).tab('show');\n});\n}"},"evals":["options.columnDefs.0.createdCell","callback"],"jsHooks":[]}</script>
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</div>
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<div class="tab-pane" title="Source" data-value="Source" id="tab-covr-2">
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<div id="files">
@@ -1407,7 +1407,7 @@ <h2>hermes coverage - 88.85%</h2>
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<td class="num">185</td>
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<td class="coverage">8<em>x</em></td>
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<td class="col-sm-12">
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<pre class="language-r"> expect_factor(colData(object)[[group]], n.levels = 2L)</pre>
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<pre class="language-r"> assert_factor(colData(object)[[group]], n.levels = 2)</pre>
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</td>
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</tr>
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<tr class="never">
@@ -1925,7 +1925,7 @@ <h2>hermes coverage - 88.85%</h2>
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<td class="num">259</td>
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<td class="coverage">2<em>x</em></td>
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<td class="col-sm-12">
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<pre class="language-r"> expect_proportion(adj_p_val_thresh)</pre>
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<pre class="language-r"> assert_proportion(adj_p_val_thresh)</pre>
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</td>
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</tr>
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<tr class="covered">
@@ -12522,21 +12522,21 @@ <h2>hermes coverage - 88.85%</h2>
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<td class="num">39</td>
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<td class="coverage">29<em>x</em></td>
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<td class="col-sm-12">
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<pre class="language-r"> expect_proportion(min_cpm_prop)</pre>
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<pre class="language-r"> assert_proportion(min_cpm_prop)</pre>
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</td>
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</tr>
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<tr class="covered">
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<td class="num">40</td>
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<td class="coverage">24<em>x</em></td>
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<td class="col-sm-12">
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<pre class="language-r"> expect_proportion(min_corr)</pre>
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<pre class="language-r"> assert_proportion(min_corr)</pre>
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</td>
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</tr>
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<tr class="covered">
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<td class="num">41</td>
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<td class="coverage">19<em>x</em></td>
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<td class="col-sm-12">
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<pre class="language-r"> expect_count(min_depth, positive = TRUE, null.ok = TRUE)</pre>
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<pre class="language-r"> assert_numeric(min_depth, lower = 0, null.ok = TRUE, len = 1)</pre>
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</td>
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</tr>
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<tr class="never">
@@ -28956,7 +28956,7 @@ <h2>hermes coverage - 88.85%</h2>
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<td class="num">152</td>
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<td class="coverage">4<em>x</em></td>
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<td class="col-sm-12">
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<pre class="language-r"> expect_proportion(alpha)</pre>
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<pre class="language-r"> assert_proportion(alpha)</pre>
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</td>
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</tr>
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<tr class="never">

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