Temporarily disable RUF059 and renable it to upgrade our pre-commit rules

[RayBB]

Pre-commit rules have been stuck not updating since September!

I tried to fix warning it gives about RUF059 but it's pretty hard to isolate the changes that need manual review. There are ~15 files that need manual review for fixes for this issue. But as soon as you make those fixes pre-commit will also fix all the other 100 files with small changes that it has since made.

My solutions is as follows:

1. Disable the rule disable ruff RUF059 #11746
2. Update pre-commit with all automatic fixes [pre-commit.ci] pre-commit autoupdate #11273
3. Re-enable the rule and manually address warnings enable RUF059 #11764
4. Bonus: remove UP038 from the config since it will be no longer part of Ruff remove deprecated rule UP038 #11763

This issue can be closed when all three have been completed.