@@ -307,19 +307,73 @@ The agent would synthesize all results into a summary of available data, relevan
307307
308308## 8. HTTP API Cheat Sheet
309309
310- | Task | Method | Command |
311- | ------| --------| ---------|
312- | List genomes | GET | ` curl https://chip-atlas.org/data/list_of_genome.json ` |
313- | List experiment types | GET | ` curl https://chip-atlas.org/data/list_of_experiment_types.json ` |
314- | Experiment types with counts | GET | ` curl "https://chip-atlas.org/data/experiment_types?genome=hg38&clClass=Blood" ` |
315- | Sample types with counts | GET | ` curl "https://chip-atlas.org/data/sample_types?genome=hg38&agClass=Histone" ` |
316- | List antigens | GET | ` curl "https://chip-atlas.org/data/chip_antigen?genome=hg38&agClass=Histone&clClass=Blood" ` |
317- | List cell types | GET | ` curl "https://chip-atlas.org/data/cell_type?genome=hg38&agClass=Histone&clClass=Blood" ` |
318- | Search experiments | GET | ` curl "https://chip-atlas.org/data/search_experiments?query=CTCF&limit=5" ` |
319- | Experiment metadata | GET | ` curl "https://chip-atlas.org/data/exp_metadata.json?expid=SRX018625" ` |
320- | Colocalization index | GET | ` curl "https://chip-atlas.org/data/colo_analysis.json?genome=hg38" ` |
321- | Target genes index | GET | ` curl https://chip-atlas.org/data/target_genes_analysis.json ` |
322- | Download BED URL | POST | ` curl -X POST https://chip-atlas.org/download -H "Content-Type: application/json" -d '{"condition": {"genome": "hg38", "agClass": "Histone"}}' ` |
310+ ** List genomes** — GET
311+
312+ ``` bash
313+ curl https://chip-atlas.org/data/list_of_genome.json
314+ ```
315+
316+ ** List experiment types** — GET
317+
318+ ``` bash
319+ curl https://chip-atlas.org/data/list_of_experiment_types.json
320+ ```
321+
322+ ** Experiment types with counts** — GET
323+
324+ ``` bash
325+ curl " https://chip-atlas.org/data/experiment_types?genome=hg38&clClass=Blood"
326+ ```
327+
328+ ** Sample types with counts** — GET
329+
330+ ``` bash
331+ curl " https://chip-atlas.org/data/sample_types?genome=hg38&agClass=Histone"
332+ ```
333+
334+ ** List antigens** — GET
335+
336+ ``` bash
337+ curl " https://chip-atlas.org/data/chip_antigen?genome=hg38&agClass=Histone&clClass=Blood"
338+ ```
339+
340+ ** List cell types** — GET
341+
342+ ``` bash
343+ curl " https://chip-atlas.org/data/cell_type?genome=hg38&agClass=Histone&clClass=Blood"
344+ ```
345+
346+ ** Search experiments** — GET
347+
348+ ``` bash
349+ curl " https://chip-atlas.org/data/search_experiments?query=CTCF&limit=5"
350+ ```
351+
352+ ** Experiment metadata** — GET
353+
354+ ``` bash
355+ curl " https://chip-atlas.org/data/exp_metadata.json?expid=SRX018625"
356+ ```
357+
358+ ** Colocalization index** — GET
359+
360+ ``` bash
361+ curl " https://chip-atlas.org/data/colo_analysis.json?genome=hg38"
362+ ```
363+
364+ ** Target genes index** — GET
365+
366+ ``` bash
367+ curl https://chip-atlas.org/data/target_genes_analysis.json
368+ ```
369+
370+ ** Download BED URL** — POST
371+
372+ ``` bash
373+ curl -X POST https://chip-atlas.org/download \
374+ -H " Content-Type: application/json" \
375+ -d ' {"condition": {"genome": "hg38", "agClass": "Histone"}}'
376+ ```
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