DESCRIPTION

Package: MALDIpqi
Title: Estimate Parchment Glutamine Index from MALDI-TOF datasets
Version: 0.0.1
Authors@R: 
    person("Ismael", "Rodriguez", , "ismael@palaeome.org", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-5313-9709"))
    person("Carsten", "Wiuf", , "wiuf@math.ku.dk", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-1302-4445"))
    person("Bharath", "Nair", , "bharath@palaeome.org", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-1897-4132"))
Description: It uses weighted least squares to deconvolute isotopic envelopes and calculate
             glutamine deamidation level for a selection of peptides, from parchment sample triplicates.
             A linear mixed effects model is then used to integrate the values into a
             single Parchment Glutamine Index (PQI) per sample.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports: 
    MALDIquant,
    bacollite,
    readr,
    ggplot2,
    ggpubr,
    functional,
    nlme,
    tibble,
    dplyr,
    magrittr,
    tidyr,
    utils,
    stringr,
    stats,
    data.table,
    MALDIrppa,
    MALDIzooMS (>= 0.1.0),
    Spectra (>= 1.14.0),
    BiocParallel
URL: https://github.com/ismaRP/MALDIpqi
BugReports: https://github.com/ismaRP/MALDIpqi/issues
Depends: 
    R (>= 4.0)
Remotes: 
    github::ismaRP/MALDIzooMS,
    github::ismaRP/bacollite