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eval_PPB.py
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import numpy as np
import torch
from sklearn import metrics
import os
import argparse
from utils.load_utils import load_data, load_model
from utils.dataloader import get_data_loader
from utils.train import set_seed
import pandas as pd
from scipy.stats import pearsonr, spearmanr
from train_PPB import recursive_to
def evaluate(args, dataloader):
with torch.no_grad():
args.model.eval()
y_pred = np.array([])
y_true = np.array([])
mean = -10.2885065
std = 2.9513037
for batch in dataloader:
batch = recursive_to(batch, args.device)
compound_class = batch['label']
output, _ = args.model(batch)
output_org = output * std + mean
compound_class = compound_class * std + mean
y_pred = np.concatenate((y_pred, output_org[:, 0].detach().cpu().numpy()))
y_true = np.concatenate((y_true, compound_class.detach().cpu().numpy()))
rmse = np.sqrt(metrics.mean_squared_error(y_true, y_pred))
pearson_corr, _ = pearsonr(y_true, y_pred)
spearman_corr, _ = spearmanr(y_true, y_pred)
test_df = pd.DataFrame({})
test_df['label'] = y_true
test_df['pred'] = y_pred
return rmse, pearson_corr, spearman_corr, test_df
def build_argparse():
parser = argparse.ArgumentParser()
parser.add_argument("--use_SFL", default=0, type=int)
parser.add_argument("--note", default=None, type=str)
parser.add_argument('--arch_type', default='dg_model', type=str)
parser.add_argument('--dataset', default='PPB', type=str)
parser.add_argument('--save_dir', default='ckpt_PPB/base', type=str)
parser.add_argument('--device', default='cuda:0', type=str)
parser.add_argument('--batch_size', default=16, type=int)
parser.add_argument('--num_workers', default=8, type=int)
args = parser.parse_args()
args = load_data(args)
args = load_model(args)
if args.note:
args.load_model_dir = os.path.join(args.save_dir, args.arch_type + '_' + args.note + '_' + args.dataset)
else:
args.load_model_dir = os.path.join(args.save_dir, args.arch_type + '_' + args.dataset)
return args
if __name__ == '__main__':
args = build_argparse()
df_list = []
for dir in os.listdir(args.load_model_dir):
if not dir.endswith('.txt'):
set_seed(int(dir))
load_model_path = os.path.join(args.load_model_dir, os.path.join(dir, 'best_model.pt'))
save_result_path = os.path.join(args.load_model_dir, os.path.join(dir, 'results.csv'))
state_dict = torch.load(load_model_path, map_location=args.device)
args.model.load_state_dict(state_dict)
# load test_id, test_xood, test_yood, test_xyood
modes = ['test_xood', 'test_yood', 'test_xyood']
results = {}
for mode in modes:
dataloader = get_data_loader(args=args, mode=mode)
results[mode] = evaluate(args, dataloader)
rmse_xood, pearson_corr_xood, spearman_corr_xood, pred_df_xood = results['test_xood']
rmse_yood, pearson_corr_yood, spearman_corr_yood, pred_df_yood = results['test_yood']
rmse_xyood, pearson_corr_xyood, spearman_corr_xyood, pred_df_xyood = results['test_xyood']
save_pred_path = os.path.join(args.load_model_dir, os.path.join(dir, 'pred_xood.csv'))
pred_df_xood.to_csv(save_pred_path, index=False, header=True)
save_pred_path = os.path.join(args.load_model_dir, os.path.join(dir, 'pred_yood.csv'))
pred_df_yood.to_csv(save_pred_path, index=False, header=True)
save_pred_path = os.path.join(args.load_model_dir, os.path.join(dir, 'pred_xyood.csv'))
pred_df_xyood.to_csv(save_pred_path, index=False, header=True)
rmse_score = (rmse_xood + rmse_yood + rmse_xyood) / 3
pearson_corr_score = (pearson_corr_xood + pearson_corr_yood + pearson_corr_xyood) / 3
spearman_corr_score = (spearman_corr_xood + spearman_corr_yood + spearman_corr_xyood) / 3
data = {
'Metric': ['RMSE', 'Pearson', 'Spearman'],
'Score': [rmse_score, pearson_corr_score, spearman_corr_score],
'XOOD': [rmse_xood, pearson_corr_xood, spearman_corr_xood],
'YOOD': [rmse_yood, pearson_corr_yood, spearman_corr_yood],
'XYOOD': [rmse_xyood, pearson_corr_xyood, spearman_corr_xyood],
}
df = pd.DataFrame(data)
df.to_csv(save_result_path, index=False)
df_list.append(df)
df_combined = pd.concat(df_list)
average_scores = df_combined.groupby('Metric').mean()
std_scores = df_combined.groupby('Metric').std()
formatted_scores = average_scores.applymap(lambda x: f"& {x:.3f}") + std_scores.applymap(lambda x: f"±{x:.3f}")
formatted_string = formatted_scores.to_string(index=True, header=True)
with open(os.path.join(args.load_model_dir, args.arch_type + '_' + args.dataset + '_results.txt'), 'w', encoding='utf-8') as file:
file.write(formatted_string)
print(formatted_string)