For file msLesionAgnostic_104.nii.gz
in Dataset902_msLesionAgnostic
, the vertebral level file produced by totalspineseg
produced the following list of vert levels: [ 0. 1. 2. 3. 4. 5. 6. 7. 8. 10.] -> it is missing level 9.
This might be normal as the slice thickness is very high (5mm).
I am reporting this in this issue to keep it in mind to adapt my code.
Tagging @NathanMolinier to let you know as well. (I can send you the files if you are interested)