AI-CDS-Disease-Diagnosis-Reproduction-Alpha/.gitignore at main · jamesEmerson112/AI-CDS-Disease-Diagnosis-Reproduction-Alpha · GitHub

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# Python
__pycache__/
*.py[cod]
*$py.class
*.so
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# Cython
*.c
!archive/cython_source/util_cy.c
*.cpp
*.html
.cython_cache/

# Compiled binaries (keep in build/)
build/*.pyd
build/*.so

# Virtual Environment
venv/
env/
ENV/
env.bak/
venv.bak/

# Machine Learning Models (typically large files)
data/models/*.bin
*.model
*.vec
*.h5
*.pkl
*.pickle
*.joblib

# Output Directories
# Note: Prediction Output* folders are now tracked to transfer results between computers
# Uncomment lines below if you want to exclude them:
# Prediction Output*/
# Prediction Symptom Details*/
output/
results/

# Jupyter Notebook
.ipynb_checkpoints
*.ipynb

# IDE - VSCode
.vscode/
*.code-workspace
.history/

# IDE - PyCharm
.idea/
*.iml
*.iws

# OS Files
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
ehthumbs.db
Thumbs.db
desktop.ini

# Downloaded original source (duplicates our files)
diseaseDiagnosis/
# diseaseDiagnosis.zip

# Logs
*.log
logs/

# Testing
.pytest_cache/
.coverage
htmlcov/
.tox/

# Temp files
*.tmp
*.bak
*.swp
*~

# Old empty directories (can be removed)
entity/
utils/
Dataset/
BioSentVec_PubMed_MIMICIII-bigram_d700.bin

# System design visualization (local-only, detailed architecture diagrams)
.system-design-visualization