JASP crashed in singularity container - hit new data & app crashes

[jvessellasmith]

System Info

• JASP version: 0.98.1
• OS name and version: Ubuntu 24.04.4 LTS
• Commit used: jasp-stats/jasp-desktop@bba3b5e

JASP Module

Unrelated

Is there a specific analysis that caused the crash?

no -

Log files

No log files are available. To get more information, please turn logging on. For this: open the file menu (the blue hamburger button left top), navigate to Advanced Preferences and check the 'Log to file' checkbox.
Debug information: Engine # 0 process does not exist (anymore) and it's state is resuming.

Steps to Reproduce

singularity run ~/jasp.sif
hit new data
crash

jared.smith27-umw@c4140c09 ~]$ singularity run ~/jasp.sif
Desktop: QML cache directory: /home/jared.smith27-umw/.cache/JASP/JASP/qmlcache_bba3b5e352e5a736344cd0d7bd4be806ddb83b65
Making new argument list for Application startup: /opt/jasp/bin/JASP
Starting JASP 0.98.1 from commit bba3b5e352e5a736344cd0d7bd4be806ddb83b65 and branch development
QtWebEngineQuick initialized
Application initialized
[1717616:1717688:0902/144357.699256:ERROR:bus.cc(408)] Failed to connect to the bus: Failed to connect to socket /run/dbus/system_bus_socket: No such file or directory
Application init entered
MainWindow constructor started
Desktop: DEBUG createSessionDir: Creating session dir at /home/jared.smith27-umw/.local/share/JASP/JASP/temp//1717616
Desktop: '/home/jared.smith27-umw/.local/share/JASP/JASP/temp//1717616' about to be (removed and re)created.
Going to construct the necessary models for JASP to function.
Desktop: [JaspRpcDispatcher] Loaded 15 method specs from /opt/jasp/bin/../Resources/JASP_RPC.json
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-ar.qm
Desktop: Language (Arabic) not registered in LanguageModel, adding it now
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-de.qm
Desktop: Language (German) not registered in LanguageModel, adding it now
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-eo.qm
Desktop: Invalid translation file found with name: jaspDesktop-eo.qm
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-es.qm
Desktop: Language (Spanish) not registered in LanguageModel, adding it now
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-eu.qm
Desktop: Language (Basque) not registered in LanguageModel, adding it now
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-fa.qm
Desktop: Invalid translation file found with name: jaspDesktop-fa.qm
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-fr.qm
Desktop: Language (French) not registered in LanguageModel, adding it now
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-gl.qm
Desktop: Language (Galician) not registered in LanguageModel, adding it now
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-id.qm
Desktop: Language (Indonesian) not registered in LanguageModel, adding it now
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-it.qm
Desktop: Language (Italian) not registered in LanguageModel, adding it now
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-ja.qm
Desktop: Language (Japanese) not registered in LanguageModel, adding it now
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-mk.qm
Desktop: Invalid translation file found with name: jaspDesktop-mk.qm
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-nl.qm
Desktop: Language (Dutch) not registered in LanguageModel, adding it now
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-pl.qm
Desktop: Language (Polish) not registered in LanguageModel, adding it now
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-pt.qm
Desktop: Language (Portuguese) not registered in LanguageModel, adding it now
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-pt_BR.qm
Desktop: Invalid translation file found with name: jaspDesktop-pt_BR.qm
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-ru.qm
Desktop: Language (Russian) not registered in LanguageModel, adding it now
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-sr.qm
Desktop: Language (Serbian) not registered in LanguageModel, adding it now
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-ta.qm
Desktop: Language (Tamil) not registered in LanguageModel, adding it now
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-tr.qm
Desktop: Language (Turkish) not registered in LanguageModel, adding it now
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-zh_Hans.qm
Desktop: Language (Chinese) not registered in LanguageModel, adding it now
Desktop: Checking qm file: /opt/jasp/Resources/Translations/jaspDesktop-zh_Hant.qm
Desktop: Language (Chinese) not registered in LanguageModel, adding it now
Desktop: Opened internal sqlite database for creation at '/home/jared.smith27-umw/.local/share/JASP/JASP/temp/1717616/internal.sqlite'. This is for thread 23221508489536
Desktop: Opened internal sqlite database for loading at '/home/jared.smith27-umw/.local/share/JASP/JASP/temp/1717616/internal.sqlite'. This is for thread 23221508489536
Desktop: Loaded a database with #0 tables.
Desktop: DataSet::DataSet(index=-1)
Desktop: Msg from Qt Warning: beginResetModel called on DataSetPackageSubNodeModel(0x55e204c48d10) without calling endResetModel first [:0, ]
Desktop: Msg from Qt Warning: endResetModel called on DataSetPackageSubNodeModel(0x55e204c48d10) without calling beginResetModel first [:0, ]
Desktop: Msg from Qt Warning: beginResetModel called on DataSetPackageSubNodeModel(0x55e204c4a580) without calling endResetModel first [:0, ]
Desktop: Msg from Qt Warning: endResetModel called on DataSetPackageSubNodeModel(0x55e204c4a580) without calling beginResetModel first [:0, ]
Desktop: Msg from Qt Warning: beginResetModel called on DataSetPackageSubNodeModel(0x55e204c48cb0) without calling endResetModel first [:0, ]
Desktop: Msg from Qt Warning: endResetModel called on DataSetPackageSubNodeModel(0x55e204c48cb0) without calling beginResetModel first [:0, ]
Desktop: DataSetPackage::reset()
Desktop: EngineSync::enginesPrepareForData!
Desktop: Msg from Qt Warning: beginResetModel called on DataSetPackageSubNodeModel(0x55e204c48d10) without calling endResetModel first [:0, ]
Desktop: Msg from Qt Warning: beginResetModel called on DataSetPackageSubNodeModel(0x55e204c48d10) without calling endResetModel first [:0, ]
Desktop: Msg from Qt Warning: endResetModel called on DataSetPackageSubNodeModel(0x55e204c48d10) without calling beginResetModel first [:0, ]
Desktop: Msg from Qt Warning: beginResetModel called on DataSetPackageSubNodeModel(0x55e204c4a580) without calling endResetModel first [:0, ]
Desktop: Msg from Qt Warning: beginResetModel called on DataSetPackageSubNodeModel(0x55e204c4a580) without calling endResetModel first [:0, ]
Desktop: Msg from Qt Warning: endResetModel called on DataSetPackageSubNodeModel(0x55e204c4a580) without calling beginResetModel first [:0, ]
Desktop: DataSet::DataSet(index=-1)
Desktop: Msg from Qt Warning: beginResetModel called on DataSetPackage(0x55e204c15c60) without calling endResetModel first [:0, ]
Desktop: Msg from Qt Warning: beginResetModel called on DataSetPackageSubNodeModel(0x55e204c48cb0) without calling endResetModel first [:0, ]
Desktop: Msg from Qt Warning: beginResetModel called on DataSetPackageSubNodeModel(0x55e204c48d10) without calling endResetModel first [:0, ]
Desktop: Msg from Qt Warning: endResetModel called on DataSetPackageSubNodeModel(0x55e204c48d10) without calling beginResetModel first [:0, ]
Desktop: Msg from Qt Warning: beginResetModel called on DataSetPackageSubNodeModel(0x55e204c4a580) without calling endResetModel first [:0, ]
Desktop: Msg from Qt Warning: endResetModel called on DataSetPackageSubNodeModel(0x55e204c4a580) without calling beginResetModel first [:0, ]
Desktop: DataSetPackage::endLoadingData
Desktop: Msg from Qt Warning: endResetModel called on DataSetPackage(0x55e204c15c60) without calling beginResetModel first [:0, ]
Desktop: Msg from Qt Warning: endResetModel called on DataSetPackageSubNodeModel(0x55e204c48cb0) without calling beginResetModel first [:0, ]
Desktop: Msg from Qt Warning: endResetModel called on DataSetPackageSubNodeModel(0x55e204c48d10) without calling beginResetModel first [:0, ]
Desktop: Msg from Qt Warning: endResetModel called on DataSetPackageSubNodeModel(0x55e204c4a580) without calling beginResetModel first [:0, ]
Desktop: EngineSync::enginesReceiveNewData!
Entering eventloop
[1717716:7:0902/144402.724120:ERROR:command_buffer_proxy_impl.cc(125)] ContextResult::kTransientFailure: Failed to send GpuControl.CreateCommandBuffer.
[1717719:7:0902/144402.724435:ERROR:command_buffer_proxy_impl.cc(125)] ContextResult::kTransientFailure: Failed to send GpuControl.CreateCommandBuffer.
/opt/jasp/bin/JASPEngine: symbol lookup error: /opt/jasp/bin/JASPEngine: undefined symbol: R_getVarEx
/opt/jasp/bin/JASPEngine: symbol lookup error: /opt/jasp/bin/JASPEngine: undefined symbol: R_getVarEx

[github-actions]

@jvessellasmith, thanks for taking the time to create this report. Please upload to the issue website (#4518, attaching to an email does not work) the log files from JASP. For more information read our Logging Guide page to learn where to (and how to) find JASP log files.